SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10716

Length: 579 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10716 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2990	11/13
SustainPine v2.0	sp_v2.0_unigene34856	2/13

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 4 n=35 Tax=Magnoliophyta RepID=NU4M_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	nadh dehydrogenase subunit 4	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	88%
Blast2go	Metabolic pathways	01100		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	88%
Blast2go	ATP synthesis coupled electron transport	GO:0042773	Biological Process	88%
Blast2go	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	88%
Blast2go	respiratory chain	GO:0070469	Cellular Component	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	mitochondrial membrane	GO:0031966	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	NADH:ubiquinone oxidoreductase	IPR003918	-	-
Sma3	NADH-quinone oxidoreductase, chain M/4	IPR010227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
134	25	75			0.996473
136			25	75	0.996473
206	75		25		0.996473
226	50		50		1.0
228	50		50		1.0
235	20			80	0.995493
236	20			80	0.995493
237		20	80		0.995493
280	75		25		0.996473
319	75		25		0.996473
321	75		25		0.996473
323	75		25		0.996473
360	87		12		0.992554
386		14		85	0.993533
387		14		85	0.993533
388		14	85		0.993533
393	33		66		1.0
463	80			20	0.995493
464	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain