SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10715

Length: 896 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10715

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16	19/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-lactamase multi-domain protein	-	-	4.0e-37	31%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	0.0	75%
Blast2go	abc1 family protein	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	lipopolysaccharide core region biosynthetic process	GO:0009244	Biological Process	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-related	IPR001466	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	ATP-citrate lyase/succinyl-CoA ligase, active site	IPR017440	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C0P5C4

Fln msg: Overlapping hits, possible frame ERROR between 249 and 243, Distance to subject end: 182 aas, your sequence is shorter than subject: 299 - 640

Fln protein: NVQYVIGIQVCAYKDGKVIIDTAAGTLGKYDPRPVQPDSLFSVFSATKGVTAGLVHWMVDKGKFSLVDIVANLWPDFAVNxxxxCKVAHVLNHTAGLHNAMLDVIKEDPYLMCNWEESLKRVATAKPESAPGSEQKYHSLSFGWLCGGLIEQASGKKFQEILEEAFIRPLDINGELYIGIPPGVESRLASLSLDMQDMQKVVSMNLPRISQEENISTKLEGASAIGDIAEAITVLPSLFNMLFIRRAIIPAANGHCSARALARYYAALATGGVIPPRPSSSEPPLGSHSHIPAFPSGEG

Protein Length: 300

Fln nts: AATGTACAATATGTCATTGGAATCCAGGTATGTGCATATAAAGATGGGAAGGTTATCATAGATACTGCGGCGGGAACTCTTGGGAAATATGATCCTCGGCCAGTACAGCCTGATAGCCTGTTCTCTGTTTTCTCAGCCACCAAGGGTGTGACTGCAGGGCTTGTCCATTGGATGGTAGATAAAGGGAAGTTCAGTCTTGTTGACATTGTGGCAAACCTGTGGCCTGACTTTGCTGTTAATxxxxxxxxxxxxTGCAAGGTTGCTCATGTCCTTAACCATACAGCTGGACTTCATAATGCCATGTTGGATGTCATTAAGGAAGATCCTTACTTAATGTGCAATTGGGAGGAGTCATTAAAAAGAGTAGCTACAGCAAAACCTGAATCTGCTCCTGGCTCTGAGCAGAAATATCATTCCCTGTCTTTTGGTTGGCTCTGTGGGGGGTTAATAGAGCAAGCATCTGGGAAGAAATTTCAGGAGATTCTTGAAGAAGCGTTTATACGCCCTCTTGATATTAATGGGGAGCTTTATATTGGCATTCCACCAGGTGTGGAATCTCGACTTGCTTCACTTTCTCTGGACATGCAGGATATGCAGAAGGTTGTTTCCATGAATTTGCCCAGAATTTCCCAAGAAGAAAACATTTCTACTAAACTTGAGGGGGCAAGTGCAATTGGTGACATTGCAGAAGCGATAACTGTGTTGCCTTCTTTGTTCAATATGCTTTTTATCCGGCGAGCAATCATACCAGCAGCAAATGGACATTGTTCTGCCCGTGCATTGGCAAGATACTATGCAGCGCTTGCTACAGGTGGTGTTATTCCTCCCAGACCTTCTTCAAGTGAGCCTCCTTTGGGTAGCCATTCTCACATACCAGCCTTCCCTTCTGGGGAAGGT

Fln Alignment:

Contig10715___VIGIQVCAYKDGKVIIDTAAGTLGKYDPRPVQPDSLFSVFSATKGVTAGLVHWMVDKGKFSLVDIVANLWPDFAVNGxxACKVAHVLNHTAGLHNAMLDVIKEDPYLMCNWEESLKRVATAKPESAPGSEQKYHSLSFGWLCGGLIEQASGKKFQEILEEAFIRPLDINGELYIGIPPGVESRLASLSLDMQDMQKVVSMNLPRISQEENISTKLEGASAIGDIAEAITVLPSLFNMLFIRRAIIPAANGHCSXXXXXXXXXXXXTGGVIPPRPSS-SEPPLGSHSHIPAFPS
C0P5C4__________________ILGIQVCAYKDGKVIIDTAAGMLGKYDPRPVQPDSLFPVFSVTKGITAGMVHWLVDKGKLKYEETVANIWPNFGTNGxxLIKVHHLLNHTSGLHNALGDVVKNDPLLVCDWEETLNQITKSTPETEPGSAQIYHYLSFGWLCGGVIEHASGKKFQEILEEAIVRPLHIEGELYVGIPPGVESRLAALTVDTEELQK-----LSGIRAGADVP-----AALLNNIAQMASGVPAIFNTLNVRRAIIPAANGHCSARALARYYAALAAGGSVPPPHSSGAMPPLGSHVHTPKFPT

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
52			66	33	0.997452
153	25	75			0.996473
243		50		50	1.0
280	16	83			0.994512
283	83		16		0.994512
284		83		16	0.994512
363	66		33		0.997452
391		33		66	0.997452
509	20		80		0.995493
510		60		20	0.99255
511		80		20	0.995493
528	25		75		0.996473
707		16		83	0.994512
717	16			83	0.994512
729	40		60		1.0
731	40			40	1.0
734	33			66	0.997452
735		33		66	0.997452
738		66		33	0.997452
854	25	75			0.996473
856		75		25	0.996473
871		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain