SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10711

Length: 1577 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10711 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5091	35/38
SustainPine v2.0	sp_v2.0_unigene32186	2/38

Source	Descriptions	Term	Type	Identity
AutoFact	IAA-amino acid hydrolase ILR1, putative n=1 Tax=Ricinus communis RepID=B9S5P0_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	iaa-amino acid hydrolase ilr1	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	75%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Amidohydrolase	IPR017439	-	-
Sma3		IPR010168	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMJ2

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 408 - 456

Fln protein: MYFSFIEASPCRLGVRSCCCSCLLFFACIGLISSLLLTAKGLPLPVSAQEGAVAGAQGLLKDAKGEEMFEWLKSVRRRIHRNPELKFEEFNTSKLIRDELDAMGVHFEWPFAQTGVVATIGSGTAPVVALRADMDALPLQELVDWEHKSVNIGKMHACGHDAHVTMLLGAAKLLHKHKDKLQGTVRLIFEAVVEGGGGAAHMIRxxxxITADPIVATAFAILSLQQIVSRESDPLDSEVVSVTFMDGGKGFNIIPNKVRFGGTLRSLTSEGLAKLKRRIKEIIEKQAAVNGCSGFIDFREDLRPEYPPTVNDKKLYNHVKIVGQILLGVHNVKNEDPTMAAEDFAFYTHTIPGAFLMIGVRNESIGSIHSVHSPHFFLDEEVLPVGAALHATIAKMYLDHGRPLSTE*

Protein Length: 409

Fln nts: GCTATTCTGCCCATGTGCCCTCCCTTTTGCCTGCGGCAATTTTCTTCTAATAGGCCACAGCCTCTATAATTTTCTGCAGTGTAGCTCC_-_ATGTATTTTTCCTTTATTGAAGCATCTCCATGCCGATTGGGTGTGAGATCCTGTTGCTGTTCATGCCTGCTATTTTTTGCGTGTATAGGATTAATTTCCTCCCTACTTCTAACGGCTAAAGGCCTGCCCCTGCCGGTCTCTGCTCAAGAGGGCGCTGTAGCTGGAGCACAAGGGCTTCTGAAAGATGCTAAAGGGGAAGAGATGTTTGAGTGGTTGAAGTCGGTAAGGAGGAGAATTCACAGAAATCCGGAGCTAAAGTTTGAGGAATTCAATACCAGCAAACTAATAAGAGATGAGCTGGATGCAATGGGAGTGCATTTCGAATGGCCCTTTGCACAGACGGGTGTGGTTGCCACCATCGGATCGGGCACTGCCCCAGTTGTTGCACTTCGTGCCGACATGGATGCCCTCCCATTGCAGGAGCTTGTGGATTGGGAGCACAAGAGTGTGAATATTGGCAAAATGCATGCTTGTGGGCATGATGCACATGTTACTATGCTTCTTGGAGCTGCCAAATTGCTTCATAAACACAAGGATAAACTTCAGGGCACTGTAAGACTTATTTTTGAAGCTGTTGTAGAAGGAGGTGGTGGTGCTGCTCACATGATTCGTxxxxxxxxxxxxATTACTGCAGATCCAATTGTAGCTACAGCCTTTGCAATTTTGAGCTTGCAGCAAATTGTTTCTCGAGAGAGTGATCCTCTTGACAGTGAAGTAGTATCAGTAACATTCATGGATGGTGGTAAAGGATTCAATATCATTCCAAACAAAGTTAGATTTGGGGGCACGTTACGGAGCCTTACATCTGAAGGACTTGCTAAGCTAAAGAGAAGAATCAAAGAGATTATAGAGAAGCAGGCTGCTGTAAATGGGTGCTCAGGATTTATTGATTTTAGAGAAGATCTACGCCCTGAATATCCTCCCACTGTCAATGACAAAAAGCTGTATAATCATGTGAAAATCGTTGGGCAAATTTTGCTTGGGGTACATAATGTCAAGAATGAAGATCCAACAATGGCAGCGGAAGATTTTGCGTTTTATACACACACAATACCAGGTGCCTTTTTGATGATTGGAGTGAGAAATGAGAGCATTGGCTCAATCCATTCAGTTCATTCACCTCATTTTTTCTTAGATGAAGAAGTGCTTCCTGTTGGAGCAGCTTTACATGCGACAATTGCAAAAATGTATTTGGACCATGGCAGACCCTTGAGTACAGAGTAG___ATAAGAACCAATTGTTTTTATTTTCTTAGTTAGGCTGCTGCTCGATAAAAAGTTAATGAACTTCCAACAAAACAAACATTTTCAAGTTTTATCACTTTTTAGTATGACAGAAGCACTCGACATTACAGAAGCAATTTCACCTCATCATTGTTACATCAGCTTAAGAGTAGTGAAGAGAGTAGATGACAACCAATCATATTCATTTTCTTAGTCAAGCTGCTGCTCAAAAAATATTGGAGGTGAGAGAACTTCCAACAAAACAACATT

Fln Alignment:

Contig10711___MYFSFIEASPCRLGVRXXXXXXXXXFACIGLISSLLLTAKGLPLPVSAQEGAVAGAQGLLKDAKGEEMFEWLKSVRRRIHRNPELKFEEFNTSKLIRDELDAMGVHFEWPFAQTGVVATIGSGTAPVVALRADMDALPLQELVDWEHKSVNIGKMHACGHDAHVTMXXXXXXXXXXXXXXLQGTVRLIFXXXXXXXXXXAHMIRYAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMLHITADPIVATAFAILSLQQIVSRESDPLDSEVVSVTFMDGGKGFNIIPNKVRFGGTLRSLTSEGLAKLXXXXXXXXXKQAAVNGCSGFIDFREDLRPEYPPTVNDKKLYNHVKIVGQILLGVHNVKNEDPTMAAEDFAFYTHTIPGAFLMIGVRNESIGSIHSVHSPHFFLDEEVLPVGAALHATIAKMYLDHGRPLST
B8LMJ2__________________MYSLFSETSLCRFGVRSCYCPCLLFFACIGLVSSLLLMGKGLSLPVSAQESAVTEAQGLLKDAKGEETFEWLKSIRRRIHRNPELKFEEFNTSKLIRDELDAMGVHYEWPFAQTGVVATIGSGTAPVVALRADMDALPLQELVDWEHKSVNIGKMHACGHDAHVTMLLGAAKLLHKHKDKLQGTVRLIFQPAEEGGAGAAHMIREGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMPHITADPIVATSFAILSLQQIVSRESDPLDSQVVSVTFMDGGKGFNIIPNKVRFGGTLRSLTSEGLAKIRRRIKEIIEKQAAVNGCTGFVDFKEDTHPEYPPTVNDEKLHNHVKKAGQTLLGAHNVKDANPVMGAEDFAFYTHIIPGAFFLVGVRNESINSIHSLHSPRFFLDEKVLPLGAALHATIAKMYLDHGGPLST

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
373		25	75		0.996473
374	25		75		0.996473
376			75	25	0.996473
383		33	66		0.997452
1223		33	66		1.0
1242	33			66	1.0
1244			33	66	1.0
1335		75		25	0.996473
1348		75		25	0.996473
1363		75	25		0.996473
1370	25		75		0.996473
1395		25		75	0.996473
1397			75	25	0.996473
1398			75	25	0.996473
1404	66		33		0.997452
1443	25		75		0.996473
1492	75	25			0.996473
1494	75			25	0.996473
1500	33		66		0.997452
1501		33	66		0.997452
1504		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain