SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10696

Length: 1179 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10696 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1421	16/17
SustainPine v2.0	sp_v2.0_unigene34677	1/17

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana] sp\|Q93ZG7.2\|RH38_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 38; AltName: Full=Low expression of osmotically-responsive genes 4 protein; AltName: Full=Protein CRYOPHYTE emb\|CAB64214	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	dead-box atp-dependent rna helicase 38-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	response to heat	GO:0009408	Biological Process	78%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	78%
Blast2go	poly(A)+ mRNA export from nucleus	GO:0016973	Biological Process	78%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	78%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	78%
Blast2go	RNA-dependent ATPase activity	GO:0008186	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	RNA helicase activity	GO:0003724	Molecular Function	78%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNL9

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 393 - 507

Fln protein: ASSSESKTEVTVAEEKKRWGDVEFDDEKKDDKVSEAVDISSLKISEEGALDRAEPVFKSEGQVHAVDSEDSNIRAVTAGDTPYTSAKTFEELNLSPELLRGLYSEMGFEKPSKIQAISLPMILTPPYQNLIAQAHNGSGKTTCFVLGMLSRVDPKIAAPQALCVCPTRELAMQNQEVLVKMGKHTGITSVCAVPTDIGNYVSTSRRGPVNDQVVIGTPGTLKKWMSTKVLSMRHIKILVFDEADHMLAQDGFQDDSLRIIKDIQKNRDDCQILLFSATYDENVKQFTTRVISKANQVFVKKEELSLDVIKQYVVKCPDELAKVEVLKDKIFPLAEKLGQSIIFVRTRENASMLHSKLEAEGYKCTSIQGGLKLDDRDRVIKEFRTGLTKILNI

Protein Length: 394

Fln nts: GCATCATCATCGGAGAGTAAAACTGAGGTGACTGTGGCTGAAGAGAAGAAGCGATGGGGGGACGTAGAATTTGATGATGAGAAGAAGGACGATAAGGTTTCCGAAGCAGTGGATATAAGTTCATTAAAGATCAGCGAGGAGGGAGCCTTGGACAGAGCTGAACCTGTTTTCAAAAGCGAAGGGCAAGTACACGCAGTCGATTCAGAAGACTCGAATATCAGAGCGGTCACTGCTGGTGACACTCCTTATACTTCAGCAAAGACATTTGAGGAGTTGAACCTTTCACCTGAACTACTCAGAGGTCTGTACTCAGAGATGGGATTTGAGAAGCCAAGCAAGATCCAGGCAATAAGTCTTCCAATGATTCTTACTCCACCTTACCAAAATCTGATTGCTCAGGCTCATAATGGTTCTGGAAAGACTACTTGTTTTGTTCTTGGTATGTTGAGCCGGGTTGATCCCAAGATTGCTGCACCACAAGCACTTTGTGTGTGCCCAACAAGAGAACTAGCAATGCAGAATCAGGAAGTCCTGGTGAAAATGGGGAAGCATACAGGCATAACTTCGGTTTGTGCTGTGCCAACTGATATTGGAAATTATGTCTCAACGTCAAGACGTGGACCAGTTAATGATCAAGTTGTGATTGGCACGCCTGGCACACTGAAGAAATGGATGTCCACCAAAGTTTTGAGTATGAGACACATCAAAATACTTGTCTTTGATGAGGCTGATCACATGTTGGCTCAGGATGGGTTTCAAGATGATTCCCTGAGAATTATAAAGGACATTCAGAAAAATCGAGATGATTGTCAGATTCTCCTCTTTTCAGCAACCTACGATGAGAATGTCAAGCAGTTCACAACTAGGGTAATTTCAAAAGCAAATCAGGTGTTTGTGAAAAAGGAAGAGTTATCTTTAGATGTAATCAAACAGTATGTAGTGAAATGTCCAGATGAACTTGCTAAAGTAGAGGTTTTAAAGGACAAAATTTTCCCACTGGCTGAAAAACTTGGGCAGTCAATAATCTTTGTCCGCACCAGAGAGAATGCAAGTATGTTGCATAGCAAGTTAGAAGCAGAGGGTTACAAGTGCACTTCTATTCAAGGTGGACTTAAGCTGGATGACAGGGATCGTGTAATTAAGGAATTCAGAACAGGACTGACAAAGATTCTTAACATT

Fln Alignment:

Contig10696___ASSSESKTEVTVAEEKKRWGXXXXXXXXXXXXXXXXXDISSLKISEEGALDRAEPVFKSEGQVHAVDSEDSNIRAVTAGDTPYTSAKTFEELNLSPELLRGLYSEMGFEKPSKIQAISLPMILTPPYQNLIAQAHNGSGKTTCFVLGMLSRVDPKIAAPQALCVCPTRELAMQNQEVLVKMGKHTGITSVCAVPTDIGNYVSTSRRGPVNDQVVIGTPGTLKKWMSTKVLSMRHIKILVFDEADHMLAQDGFQDDSLRIIKDIQKNRDDCQILLFSATYDENVKQFTTRVISKANQVFVKKEELSLDVIKQYVVKCPDELAKVEVLKDKIFPLAEKLGQSIIFVRTRENASMLHSKLEAEGYKCTSIQGGLKLDDRDRVIKEFRTGLTKIL
B8LNL9__________________ASSSESKTDVTVTEEKKRWGDVEFDDDKKDDKVSDAVDISSLKISEEGVVDRAEAVLKSDGVMDAVDSDDSNIRAVTAGDTPYTSAKTFEELNLSPELLRGLYSEMGFEKPSKIQAISLPMILTPPYQNLIAQAHNGSGKTTCFVLGMLSRVDPKIAAPQALCVCPTRELAMQNQEVLVKMGKHTGITSVCAVPTDAGNYVSTSRRGPVNDQVVIGTPGTLKKWMSTKVLSTRHIKILVFDEADHMLAQDGFQDDSLRIIRDIQKNRDDCQILLFSATYDENVKQFTTRVISKANQVFVKKEDLSLDVIKQYLVKCPDELAKVEVLKDRIFPLAEKLGQSIIFVRTRENASMLHSKLEAEGYKCTSIQGGLKLEDRDRVIKEFRTGLTKIL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
768	20		80		0.995493
769	80			20	0.995493
770	80		20		0.995493
771		80		20	0.995493
779	80			20	0.995493
800	20		80		0.995493
806		20		80	0.995493
900	75	25			0.996473
901	25		75		0.996473
902			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain