SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10692

Length: 2676 nt

UniGene Fasta

>biog3_v1.0_unigene10692
CAGCTTTGAAGTCTCGACCTCTGGCGGATCGCAGACGCAAAGCTTAAATTTTGAGCTTTTGGGTAGCTTAAGCTGCCGCGCATCTGAACTGGGTTGTTCTTGGATTCCTTCGCCATGGCCTCTTCCTTGACTGTCTCACAGGCTTCTGCTGGCTCTGTCACTGCCACCGCCACCGCATTGAATAATGCCCCACAGTCTGAGCGCCTGATCTCCTCTGCCTCGCCAGCGGGGTTCGGCTTCAGTAAATTCGCAGGATTGAAGCTTCGGTCACATGGTAAGGTTGCCTGCTCTTCCAGAAGCTCGTCCCATAGGCGCCTGAGATCGTCGGCCCCCAAGGTCGTCCGGGCTGCTGCAGTTGAGACCCTGGAGACCACCAGTACTGGGCTGGTGGAGCAATCGATCAATGCTATCCGTTTTCTGGCCATCGATGCTGTCGAGAAGGCCAATTCTGGGCACCCTGGGTTGCCTATGGGCTGCGCCCCAATGGGTCACATATTGTATGATGAGGTCATGAAGTATAATCCCAAGAATCCCTATTGGTTTAACCGGGATCGGTTTGTGCTGAGCGCTGGACATGGGTGCATGTTGCAGTACGCTCTCTTGCATCTGGCGGGCTTCGACAGTGTGAAGGAAGAAGATTTGAAGGGCTTCCGTCAGTGGGGTAGCAGAACGCCAGGACATCCTGAAAATTTCGAGACTCCTGGTGTGGAAGTCACAACTGGACCACTTGGTCAAGGAATTGCTAATGCAGTTGGTTTGGCACTTGCTGAGAAACATCTAGCGGCTAGATACAATAAGCCAGACTCCACTATTGTTGATCATTACACATATTGTATTGTTGGTGATGGCTGCCAAATGGAGGGTATTTCCAATGAGGCCTGCTCGCTTGCTGGACACTGGGGCCTTGGAAAGCTGATTGCTTTCTATGATGACAACCACATCTCCATAGATGGTGACACTGAGATTGCATTCACAGAGGATGTTGTTACTCGTTTTGAAGGTCTGGGATGGCACACTATCTGGGTGAAGAATGGAAATACAGGTTATGATGAAATTCGTGCTGCTATTGAGGAGGCCAAATCTGTGAAGGATAGACCAACTTTAATTAAGGTCACTACTACCATTGGCTATGGGTCACCAAATAAGGCAAACAGTTACAGTGTACATGGAAGCGCTTTGGGTGCAAAGGAGGTTGATGCAACCAGGCAGAATCTGGGTTGGCCTCATCCGCCCTTCCACGTACCAGAGGAGGTTAAGAGTCACTGGAGTAGGCATGTGGCAAGGGGTGCAGCGTTTGAAGCAGAGTGGTCATCTAAATTTGCAGAACATGAGAAGAAATATCCCGAGGAGGCTGCTGAGTTCAAGGCACTAATTAGTGGTAAATTGCCTGAAGGGTGGGATAAGGCTCTGCCGGTATATACTCCGGAGAGTCCTGCTGATGCTACTCGAAATCTATCTCAACAATGTTTGAATGCACTTGTGAGGGTTCTTCCCGGACTCTTGGGTGGAAGTGCAGACCTTGCATCATCCAACATGACATTATTAAAAATGTTTGGTGACTTCCAGAAGGATACCCCTGCTGAGCGCAATATCCGTTTTGGAGTGCGTGAACATTCCATGGGAGCTATCTGCAATGGGATAGCCCTTCATGGAAGTGGCCTTATTCCTTATTGTGCTACTTTCTTTGTTTTCACAGACTACATGAGAGCAGCTATTAGAATCTCTGCACTCTCTGAAGCTGGTGTTATCTATGTAATGACCCATGATTCTATTGGTCTTGGAGAAGATGGGCCCACTCATCAACCAATAGAGCACTTGGCGAGCTTTAGGGCAATGCCCAATGTTTTGATGTTCCGTCCAGCTGATGGAAAGGAGACAGCTGGAGCTTACAAGGTTGCTGTTCTCAATAGAAAGAGGCCATCAATACTTGCTCTCTCCCGTCAAAAACTCCCACATCTTGCCGGTTCTTCAATAGAGGGTGTTGAGAAGGGAGGCTACATTATCAGTGACAATTCCTCTGGCAACAAGCCTGATGTCATTCTTATGGGTAGTGGTTCTGAGCTTGAGATTGCTGAGAAAGCTGCATCTACTTTGAGGAATGAAGGGAAAGCTGTTAGAGTTGTTTCCTTTGTCTGTTGGGAATTATTCGAAGAACAAACTCCAGCATATAAAGAAAGTGTGCTTCCGGCAGCTGTTGCTGCAAGGGTCAGTGTGGAAGCTGGTTCAACTTTTGGTTGGGAGAGGTACTTAGGATCCAAGGGAAAGGCTGTTGGGATAGACAGGTTTGGTGCGAGTGCTCCCATTGGAATCTTGTACAAGGAGTTTGGCCTCACTGCTGACAATGTGGTTGCAAATGCTAAACAAATCTTAGCATAGATTTGCTCTGAAATTTTAATTTGAGAGCAAGCTCATCCTAGTGCTGGATGGCATATTTTCCTTCCATTTTGTTAGATTTTTCACAGGATAGCAAATAGGGTGGGATACATGTCATTTAATAGCAAATGACTCAATCTCTATGTAATAAATATTTTTATTTTGCATGAATCTGAGTTGCCTACTCTTGCATTTAGTATTGAGCCATCTAAATGTCTTATAGGACGATGTAATCGATATTTTGATTTATTGAAATTGAAGGTGTGTAACCATACTGATCGAAGTCGGATTGGAAGCAGTGAC

Ace file of the UniGene biog3_v1.0_unigene10692

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22075	420/431
SustainPine v2.0	sp_v2.0_unigene61660	6/431
SustainPine v2.0	sp_v2.0_unigene70114	2/431
SustainPine v2.0	sp_v2.0_unigene79915	1/431

Source	Descriptions	Term	Type	Identity
AutoFact	putative transketolase [Oryza sativa Japonica Group]	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	transketolase	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ72

Fln msg:

Fln protein: MASSLTVSQASAGSVTATATALNNAPQSERLISSASPAGFGFSKFAGLKLRSHGKVACSSRSSSHRRLRSSAPKVVRAAAVETLETTSTGLVEQSINAIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGFDSVKEEDLKGFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVVTRFEGLGWHTIWVKNGNTGYDEIRAAIEEAKSVKDRPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATRQNLGWPHPPFHVPEEVKSHWSRHVARGAAFEAEWSSKFAEHEKKYPEEAAEFKALISGKLPEGWDKALPVYTPESPADATRNLSQQCLNALVRVLPGLLGGSADLASSNMTLLKMFGDFQKDTPAERNIRFGVREHSMGAICNGIALHGSGLIPYCATFFVFTDYMRAAIRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMFRPADGKETAGAYKVAVLNRKRPSILALSRQKLPHLAGSSIEGVEKGGYIISDNSSGNKPDVILMGSGSELEIAEKAASTLRNEGKAVRVVSFVCWELFEEQTPAYKESVLPAAVAARVSVEAGSTFGWERYLGSKGKAVGIDRFGASAPIGILYKEFGLTADNVVANAKQILA*

Protein Length: 755

Fln nts: CAGCTTTGAAGTCTCGACCTCTGGCGGATCGCAGACGCAAAGCTTAAATTTTGAGCTTTTGGGTAGCTTAAGCTGCCGCGCATCTGAACTGGGTTGTTCTTGGATTCCTTCGCC_-_ATGGCCTCTTCCTTGACTGTCTCACAGGCTTCTGCTGGCTCTGTCACTGCCACCGCCACCGCATTGAATAATGCCCCACAGTCTGAGCGCCTGATCTCCTCTGCCTCGCCAGCGGGGTTCGGCTTCAGTAAATTCGCAGGATTGAAGCTTCGGTCACATGGTAAGGTTGCCTGCTCTTCCAGAAGCTCGTCCCATAGGCGCCTGAGATCGTCGGCCCCCAAGGTCGTCCGGGCTGCTGCAGTTGAGACCCTGGAGACCACCAGTACTGGGCTGGTGGAGCAATCGATCAATGCTATCCGTTTTCTGGCCATCGATGCTGTCGAGAAGGCCAATTCTGGGCACCCTGGGTTGCCTATGGGCTGCGCCCCAATGGGTCACATATTGTATGATGAGGTCATGAAGTATAATCCCAAGAATCCCTATTGGTTTAACCGGGATCGGTTTGTGCTGAGCGCTGGACATGGGTGCATGTTGCAGTACGCTCTCTTGCATCTGGCGGGCTTCGACAGTGTGAAGGAAGAAGATTTGAAGGGCTTCCGTCAGTGGGGTAGCAGAACGCCAGGACATCCTGAAAATTTCGAGACTCCTGGTGTGGAAGTCACAACTGGACCACTTGGTCAAGGAATTGCTAATGCAGTTGGTTTGGCACTTGCTGAGAAACATCTAGCGGCTAGATACAATAAGCCAGACTCCACTATTGTTGATCATTACACATATTGTATTGTTGGTGATGGCTGCCAAATGGAGGGTATTTCCAATGAGGCCTGCTCGCTTGCTGGACACTGGGGCCTTGGAAAGCTGATTGCTTTCTATGATGACAACCACATCTCCATAGATGGTGACACTGAGATTGCATTCACAGAGGATGTTGTTACTCGTTTTGAAGGTCTGGGATGGCACACTATCTGGGTGAAGAATGGAAATACAGGTTATGATGAAATTCGTGCTGCTATTGAGGAGGCCAAATCTGTGAAGGATAGACCAACTTTAATTAAGGTCACTACTACCATTGGCTATGGGTCACCAAATAAGGCAAACAGTTACAGTGTACATGGAAGCGCTTTGGGTGCAAAGGAGGTTGATGCAACCAGGCAGAATCTGGGTTGGCCTCATCCGCCCTTCCACGTACCAGAGGAGGTTAAGAGTCACTGGAGTAGGCATGTGGCAAGGGGTGCAGCGTTTGAAGCAGAGTGGTCATCTAAATTTGCAGAACATGAGAAGAAATATCCCGAGGAGGCTGCTGAGTTCAAGGCACTAATTAGTGGTAAATTGCCTGAAGGGTGGGATAAGGCTCTGCCGGTATATACTCCGGAGAGTCCTGCTGATGCTACTCGAAATCTATCTCAACAATGTTTGAATGCACTTGTGAGGGTTCTTCCCGGACTCTTGGGTGGAAGTGCAGACCTTGCATCATCCAACATGACATTATTAAAAATGTTTGGTGACTTCCAGAAGGATACCCCTGCTGAGCGCAATATCCGTTTTGGAGTGCGTGAACATTCCATGGGAGCTATCTGCAATGGGATAGCCCTTCATGGAAGTGGCCTTATTCCTTATTGTGCTACTTTCTTTGTTTTCACAGACTACATGAGAGCAGCTATTAGAATCTCTGCACTCTCTGAAGCTGGTGTTATCTATGTAATGACCCATGATTCTATTGGTCTTGGAGAAGATGGGCCCACTCATCAACCAATAGAGCACTTGGCGAGCTTTAGGGCAATGCCCAATGTTTTGATGTTCCGTCCAGCTGATGGAAAGGAGACAGCTGGAGCTTACAAGGTTGCTGTTCTCAATAGAAAGAGGCCATCAATACTTGCTCTCTCCCGTCAAAAACTCCCACATCTTGCCGGTTCTTCAATAGAGGGTGTTGAGAAGGGAGGCTACATTATCAGTGACAATTCCTCTGGCAACAAGCCTGATGTCATTCTTATGGGTAGTGGTTCTGAGCTTGAGATTGCTGAGAAAGCTGCATCTACTTTGAGGAATGAAGGGAAAGCTGTTAGAGTTGTTTCCTTTGTCTGTTGGGAATTATTCGAAGAACAAACTCCAGCATATAAAGAAAGTGTGCTTCCGGCAGCTGTTGCTGCAAGGGTCAGTGTGGAAGCTGGTTCAACTTTTGGTTGGGAGAGGTACTTAGGATCCAAGGGAAAGGCTGTTGGGATAGACAGGTTTGGTGCGAGTGCTCCCATTGGAATCTTGTACAAGGAGTTTGGCCTCACTGCTGACAATGTGGTTGCAAATGCTAAACAAATCTTAGCATAG___ATTTGCTCTGAAATTTTAATTTGAGAGCAAGCTCATCCTAGTGCTGGATGGCATATTTTCCTTCCATTTTGTTAGATTTTTCACAGGATAGCAAATAGGGTGGGATACATGTCATTTAATAGCAAATGACTCAATCTCTATGTAATAAATATTTTTATTTTGCATGAATCTGAGTTGCCTACTCTTGCATTTAGTATTGAGCCATCTAAATGTCTTATAGGACGATGTAATCGATATTTTGATTTATTGAAATTGAAGGTGTGTAACCATACTGATCGAAGTCGGATTGGAAGCAGTGAC

Fln Alignment:

Contig10692___LNNAPQSERLISSASPAGFGFSKFAGLKLRSHGKVACXXXXXXXXXXXXXAPKVVRAAAVETLETTSTGLVEQSINAIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGFDSVKEEDLKGFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVVTRFEGLGWHTIWVKNGNTGYDEIRAAIEEAKSVKDRPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATRQNLGWPHPPFHVPEEVKSHWSRHVARGAAFEAEWSSKFAEHEKKYPEEAAEFKALISGKLPEGWDKALPVYTPESPADATRNLSQQCLNALVRVLPGLLGGSADLASSNMTLLKMFGDFQKDTPAERNIRFGVREHSMGAICNGIALHGSGLIPYCATFFVFTDYMRAAIRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMFRPADGKETAGAYKVAVLNRKRPSILALSRQKLPHLAGSSIEGVEKGGYIISDNSSGNKPDVILMGSGSELEIAEKAASTLRNEGKAVRVVSFVCWELFEEQTPAYKESVLPAAVAARVSVEAGSTFGWERYLGSKGKAVGIDRFGASAPIGILYKEFGLTADNVVANAKQILA
C0PQ72__________________LNNAIQSERLSSSASPAGFGFSKFAGLKLRSNGKVACSSRSSSQRRLRSSAPKVVRAAAVETLEAISTGLIEKSINAIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLYLAGYDSVKEEDLKGFRQWGSKTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVTTRFEGLGWHTIWVKNGNTGYDEIRAAIEEAKSVKDRPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVDATRQNLGWPHPPFHVPEEVKSHWSRHAARGASFEAEWSSKLAEHEKKYPEEAAEFKALISGKLPEGWDKALPAYTTESPADATRILSQQCLNALAKVLPGLLGGSADLASSNMTLLKMFGDFQKDTPAERNVRFGVREHSMGAICNGIAHHGSGLIPYCATFFVFTDYMRAAIRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLAGSSIEGVEKGGYTISCNASNNKPDVILMGTGSELEIAEKAAVTLRNEGKAVRVVSFVCWELFEEQTPEYKESVLPAAVAARVSVEAGSTFGWERYLGSKGKAVGIDRFGASAPIGILYKEFGLTAENVVATAKQVLA

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
101	33	66			0.997452
102	33			66	0.997452
105			66	33	0.997452
211	33			66	0.997452
221	25	75			0.996473
222	25			75	0.996473
223		75		25	0.996473
225		75		25	0.996473
311	25			75	0.996473
312	75			25	0.996473
314			75	25	0.996473
639		20	80		0.999996
665			33	66	1.0
670		16	83		0.994512
672	83			16	0.994512
673		83		16	0.994512
675	20	80			0.995493
678			80	20	0.995493
679			80	20	0.995493
880	16	83			0.994512
881	16	83			0.994512
1050	6		93		0.999364
1091	10		89		1.0
1092		10	89		1.0
1095	89			10	1.0
1112			92	7	0.999532
1152	96			3	0.98536
1153	96			3	0.98536
1208	4		95		0.995482
1211			95	4	0.995482
1212	95			4	0.995482
1248			95	4	0.997218
1322	6			93	0.999264
1326			93	6	0.999264
1327	93			6	0.999264
1343		16		83	1.0
1344	20	79			1.0
1345		83		16	1.0
1346	4	79		16	1.0
1408	10	90			0.90298
1409		10		90	0.90298
1410	10	90			0.90298
1414	11	88			0.923564
1415			88	11	0.923564
1416			88	11	0.923564
1425	10	90			0.90298
1427	10		90		0.90298
1428			90	10	0.90298
1429	90			10	0.90298
1789	89			10	0.999919
2079	90		10		0.999898
2080	90			10	0.999898
2369		91		8	0.999766
2377	86			13	1.0
2395		10		90	0.90298
2397	90			10	0.90298
2530	7			78	0.999974
2618	10			90	0.90298
2619		10	90		0.90298
2649	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain