SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10685

Length: 769 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10685 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26142	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	geranylgeranyltransferase type I beta subunit [Catharanthus roseus]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	geranylgeranyl transferase type-1 subunit beta	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein geranylgeranyltransferase type I.	EC:2.5.1.59	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	67%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	67%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	67%
Blast2go	protein geranylgeranylation	GO:0018344	Biological Process	67%
Blast2go	CAAX-protein geranylgeranyltransferase activity	GO:0004662	Molecular Function	67%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	67%
Blast2go	CAAX-protein geranylgeranyltransferase complex	GO:0005953	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fumarate lyase	IPR000362	-	0.0	-
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
317	16		83		0.994512
318	16	83			0.994512
449	25		75		0.996473
468	25		75		0.996473
470		75	25		0.996473
471	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain