SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10668

Length: 872 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10668 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6384	4/13
SustainPine v2.0	sp_v2.0_unigene29602	9/13

Source	Descriptions	Term	Type	Identity
AutoFact	perakine reductase [Rauvolfia serpentina]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	aldo keto	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPE7

Fln msg: Separated hits, possible frame ERROR between 364 and 421, your sequence is shorter than subject: 248 - 348

Fln protein: DNSIVEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETVGEMKKLVEEGKVKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRDIENEIIPACRELGIGIVPYSPLGRGxxxxxxxxxxxxxxxxxxxxPRFQPENLAKNKILFDRVSYIADKNKCTPAQLALAWVVHQGDDVVPIPGTTKIKNLDENIGSLGLKLSAQDLEEIAAAVPENEVAGSRSKYMENTWKFSNTPLPSEV*

Protein Length: 249

Fln nts: GGATAACTCAATTGTTGAAATTGTTGGCACTGCTGAATATGTGAGGAAGGCTTGTGAAGCTAGCCTGCAACGCCTGGATGTCGAATACATCGACTTATACTACCAGCATCGCGTAGACAAAAGAGTTCCCATTGAAGAAACGGTAGGGGAAATGAAGAAGCTTGTGGAAGAGGGAAAAGTAAAGTACATTGGACTTTGCGAAGTCAGCGTTGACACCCTACGAAGAGCCCATGCTGTACATCCCATCACTGCAGTTCAGTATGAGTGGTCTTTATGGTCTAGGGACATCGAAAATGAAATAATCCCCGCATGCAGGGAGCTTGGTATTGGGATTGTTCCTTATAGCCCACTAGGTCGGGGCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCAAGGTTTCAACCGGAGAATCTGGCAAAAAACAAGATTCTATTTGACCGTGTTTCATATATCGCGGACAAGAATAAATGCACCCCAGCACAACTTGCATTGGCATGGGTTGTTCATCAAGGGGATGATGTTGTTCCAATTCCAGGAACAACGAAAATCAAGAATCTAGATGAAAACATAGGGTCATTGGGTTTGAAGCTTTCAGCCCAAGACCTTGAAGAGATTGCTGCTGCAGTTCCTGAAAATGAAGTTGCTGGTTCAAGATCGAAATACATGGAGAATACATGGAAGTTTTCGAACACCCCACTTCCAAGTGAGGTCTAGGTATAACCAAGTACAACAGTGTAAATAATTGAACAAAGTTAAGTTTGCTAAAATTAAAAATGTTATACTATGTATACGAGATTGGTATGACTAATTAACATAGGAAGGGGACAACTAGTAATGACATT

Fln Alignment:

Contig10668___VEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETVGEMKKLVEEGKVKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRDIENEIIPACRELGIGIVPYSPLGRGFxxxxxxxxxxxxxxxxxxxPRFQPENLAKNKILFDRVSYIADKNKCTPAQLALAWVVHQGDDVVPIPGTTKIKNLDENIGSLGLKLSAQDLEEIAAAVPENEVAGSRSKYMENTWKFSNTP
A9NPE7__________________LEVHGDPAYVRAACEASLKRLDVECIDLYYQHRIDQKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVPYSPLGRGFxxxxxxxxxxxxxxxxxxxPRFSAENLEKNKVIFERILEIASKKRCSPSQLALAWVHHQGNDVAPIPGTTKVKNLEENIGALSVELTPLEMKEIEDSVCSAGVFGDRYSDMGSTWMNSETP

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
426			20	80	0.995493
427			75	25	0.996473
468			66	33	0.997452
473	33			66	0.997452
474		66		33	0.997452
606	16	83			0.994512
609	83			16	0.994512
652			83	16	0.994512
655	20	80			0.995493
656		20		80	0.995493
657	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain