SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10661

Length: 1330 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10661 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22424	30/31

Source	Descriptions	Term	Type	Identity
AutoFact	Sphingolipid fatty acid alpha hydroxylase n=1 Tax=Ricinus communis RepID=B9SB09_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	fatty acid 2-hydroxylase-like	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24, methionine aminopeptidase	IPR001714	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Peptidase M24A, methionine aminopeptidase, subfamily 2	IPR002468	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site	IPR018349	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADP9

Fln msg:

Fln protein: MVVKPFSVDLNQPLVFQVGHLGDAYQEWVHQPIVSRESPRFFKSDFWEFLTLTAWWVIPLVWLPVVSWSILTAMQRGLPPSMTAYLMLIGIFVWSLMEYSLHRFLFHIKTSSYWGNTLHYLLHGCHHKHPMDGYRLVFPPAATAILCIPFWSLVKLVVPFSAVPAVFGGGMLGYVMYDCTHYYLHHGRPSQKVAHDLKKYHLNHHFRNQTSGFGITSSLWDRIFDTLPPKKV*

Protein Length: 234

Fln nts: AATGTAGCATCGCTGTCACATATCAGAGGCTCCAGCTAGAAGGCAAGGTCGGGTCAAGGTCTGCGTTCGCGTCAAGCTCTCAGATCCTTTGCGAACATGTTTAGGGTTTGATCCCACAAAACGAATCCCAGGAAGTGAAGGACCGGGGCTCGACATCTGCCTGAGCAAATTCATTGTTTCTCTGTCATAAGCATAAGCAGAGTGTGCTAACATTGGAGTTAAGA_-_ATGGTTGTCAAACCTTTCTCTGTGGACCTGAACCAGCCACTTGTTTTTCAGGTTGGTCATTTAGGAGATGCATATCAGGAATGGGTGCATCAGCCAATTGTGAGCAGGGAAAGTCCTCGTTTTTTCAAAAGTGACTTCTGGGAGTTCCTCACCCTCACTGCGTGGTGGGTTATACCTCTAGTATGGTTACCTGTTGTTTCTTGGTCTATATTGACGGCAATGCAAAGAGGTTTGCCACCTAGCATGACAGCTTATCTGATGCTAATTGGAATCTTCGTCTGGTCATTAATGGAATATAGCCTGCATCGATTTCTTTTTCATATCAAGACAAGTAGTTACTGGGGAAATACTTTGCATTATCTGCTACATGGATGCCATCACAAGCATCCAATGGATGGGTATCGGCTTGTTTTCCCACCAGCTGCAACAGCAATACTATGTATACCGTTTTGGTCCCTGGTGAAACTGGTAGTGCCTTTCTCCGCTGTTCCTGCTGTTTTTGGTGGAGGCATGCTTGGATATGTAATGTATGATTGTACCCATTATTATTTACACCATGGACGACCTTCTCAAAAAGTGGCACACGACCTGAAGAAATATCATTTGAACCACCATTTTAGAAATCAGACAAGTGGGTTTGGAATTACTTCATCTTTATGGGATCGCATATTCGATACCCTTCCTCCGAAGAAGGTGTGA___GAAACCAGAGGTGACTTTTCCTGCTAGTCACTTTTTGGCAACCAGTCATGTATTCTAGTGAAAGTCGATGGTAAAGGAGACTTCTTTCTCATCAGTTATTTTGAAGTCAGAGGCAGTATTGGTTCATTTCGGCCGGATTAAGCTAGTTGTTGCTTGTTTTGTCAAATTCGATTCCAATGTTCGAGGCCAAATTTATTTTGTCCAGTTGCGCTTCAATTCTCGCGAGCATTTTGCTGCTTTGTTACACGAACTTCTCTTCGGGAGTGGAAAATGTTGACTGATTCCCTGACATTTGTGTTCTTAACCACACTATTGTCTACAGAGAACTTAAGGCTTGTTTTGTGACTTTGTAGTACCTGTGTATATCACAGTTCACATAAATTTCTATCGATTCACATTTAAAATTT

Fln Alignment:

Contig10661___MVVKPFSVDLNQPLVFQVGHLGDAYQEWVHQPIVSRESPRFFKSDFWEFLTLTAXXXXXXXXXXXXXWSILTAMQRGLPPSMTAYLMLIGIFVWSLMEYSLHRFLFHIKTSSYWGNTLHYLLHGCHHKHPMDGYRLVFPPAATAILCIPFWSLVKLVVPFSAVPAVFGGGMLGYVMYDCTHYYLHHGRPSQKVAHDLKKYHLNHHFRNQTSGFGITSSLWDRIFDTLPPKKV
D5ADP9__________________MVVKAFSVDLNQPLVFQVGHLGDAYQEWVHQPIVSREGPRFFKSDFWEFLTRTAWWVIPLVWLPVVSWSILTTIQRGLSPSMAAYLALIGIFVWSLMEYSLHRFLFHIKTSSYWGNTLHYLLHGCHHKHPMDGYRLVFPPAATAILCIPFWSLVKSVVPYTAAPAVFGGGMLGYVMYDVTHYYLHHGRPSQTVAHNLKKYHLNHHFRNQTSGFGITSSLWDSVFGTLPPKKV

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
61	66			33	0.997452
170	50	50			1.0
248	50		50		1.0
250		83	16		0.994512
251	83			16	0.994512
367	25			75	0.996473
410	33		66		0.997452
479	33	66			0.997452
480		66		33	0.997452
481		66	33		0.997452
482	66			33	0.997452
916	10		90		0.90298
917	90			10	0.90298
918	90		10		0.90298
919	90			10	0.90298
926		20	80		0.999996
927	20		80		0.999996
929	80			20	0.999996
952		87		12	0.992554
953		87		12	0.992554
1296		66		33	0.997452
1300	33	66			0.997452
1301	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain