SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10658

Length: 711 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10658 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18351	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj\|BAB03019.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM67115.1\| PHD-finger protein, putative [Arabidopsis thaliana] gb\|ABD94083.1\| At3g24010 [Arabidopsis thaliana] dbj\|BAH30	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	phd-finger protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	methylated histone residue binding	GO:0035064	Molecular Function	0.0	72%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
315	50		50		1.0
317	50		50		1.0
318		50		50	1.0
525	12		87		0.992554
527	12			87	0.992554
541		14	14		0.984337
542			85	14	0.993533
582		85		14	0.993533
583		16		83	0.994512
707	75			25	0.996473
711			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain