SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10617

Length: 571 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10617
AATGTGTTCCATTTGCGGTTTGGGATGAAGGAGTTCAGTCCATCTCTAAGCAGAGAGTTCCGTCCTTATAAACCTGATCCAGCTCCATTGCTTCATATCTGTACAACATGGGCAGTTTCACCAAGTGAAGTCATGATGGTTGGTGACAGTGTCAGAGATGATATTGGTTGTGGCAAGAGTGCTGGTGCAATTACATGTTTGCTTGATGAATCTGGCAAGTACAACAGTACTGATACAAATCTCAACCCACAACCAGATTTCAAGGTGAACTCATTATTCGAGCTTTCTAAATTATTGGACACGGAAGTTGAATTGACGCCTTAACGGTTGGGATTTTAAGGTTTGAGATTTTCTTATTTCCTCTCTAAGAGTGTAATTTTTTATCAAAGTATGATATCAAAATTAATACTTTGCATTCATCTTGAAACTTTAAATCATGTTTGAAATTAACTTCCAATAGCTGGAAAGTAGGAAATGCAGGACAGTCTATGGAAAGCAACATTCTAGTTGCAAGTGAGGATAAATATCGGTCAAATATGATATATCACCTCACGTTAGGCATACAGGCTGA

Ace file of the UniGene biog3_v1.0_unigene10617 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene405	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycolate phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RWT6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	uncharacterized hydrolase yor131c-like	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglycolate phosphatase.	EC:3.1.3.18	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	76%
Blast2go	Metabolic pathways	01100		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	phosphoglycolate phosphatase activity	GO:0008967	Molecular Function	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 2	IPR006388	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 1	IPR006439	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNP4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 89 - 152

Fln protein: MCSICGLG*RSSVHL*AESSVLINLIQLHCFISVQHGQFHQVKS*WLVTVSEMILVVARVLVQLHVCLMNLASTTVLIQISTHNQISR*

Protein Length: 90

Fln nts: AATGTGTTCCATTTGCGGTTTGGGATGAAGGAGTTCAGTCCATCTCTAAGCAGAGAGTTCCGTCCTTATAAACCTGATCCAGCTCCATTGCTTCATATCTGTACAACATGGGCAGTTTCACCAAGTGAAGTCATGATGGTTGGTGACAGTGTCAGAGATGATATTGGTTGTGGCAAGAGTGCTGGTGCAATTACATGTTTGCTTGATGAATCTGGCAAGTACAACAGTACTGATACAAATCTCAACCCACAACCAGATTTCAAGGTGA___ACTCATTATTCGAGCTTTCTAAATTATTGGACACGGAAGTTGAATTGACGCCTTAACGGTTGGGATTTTAAGGTTTGAGATTTTCTTATTTCCTCTCTAAGAGTGTAATTTTTTATCAAAGTATGATATCAAAATTAATACTTTGCATTCATCTTGAAACTTTAAATCATGTTTGAAATTAACTTCCAATAGCTGGAAAGTAGGAAATGCAGGACAGTCTATGGAAAGCAACATTCTAGTTGCAAGTGAGGATAAATATCGGTCAAATATGATATATCACCTCACGTTAGGCATACAGGCTGA

Fln Alignment:

Contig10617___LVVARVLVQLHVCLMNLASTTVLIQISTHNQISR
A9NNP4__________________LLVASVRVPLHAYLMNLASTTVLIHISTHNQISR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
389	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain