SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10610

Length: 989 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10610 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2155	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	DUF803 multi-domain protein	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	74%
Blast2go	magnesium transporter nipa2	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF679	IPR007770	-	-
Sma3	Magnesium transporter NIPA	IPR008521	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7U595

Fln msg: atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 318 - 334

Fln protein: MSLVSSAFIGASFLIKKKGLKRAGATGARAGVGGYTYLLEPLWWAGMITMIMGEAANFVAYVFAPAVLVTPLGAITIIVSAVLAHFILKETLHKMGMLGCLMCIVGSTVIVIHSPQERSIDSVTEIWHLATQPAFLLYMVAVIAVVLVLILHFVPRYGHTNILVYTGICSLMGSITVMSIKAMGIAIKLTIEGTNQLVYPATWFFTMMAITCVVMQLNYLNKALDTFNTAVVSPIYYVMFTTLTILASVIMFKDWAGQSASSIVSEICGLITILSGTIILHVTKDSDKSSSTSHYQQMSMHHSHLRCLHVTAKKTRS*

Protein Length: 319

Fln nts: A_-_ATGTCCCTTGTATCCAGTGCTTTCATAGGGGCAAGCTTTTTAATTAAGAAGAAAGGCCTGAAGCGTGCTGGAGCAACGGGAGCTCGAGCGGGTGTAGGTGGTTACACATATCTTCTAGAACCTCTCTGGTGGGCAGGAATGATCACCATGATTATGGGTGAGGCTGCGAACTTTGTAGCTTATGTCTTTGCTCCGGCTGTTCTGGTTACACCTCTAGGTGCCATAACTATCATTGTCAGTGCTGTATTGGCACACTTTATCTTGAAAGAGACCTTGCATAAGATGGGTATGCTAGGATGCCTCATGTGCATAGTTGGTTCTACAGTTATTGTAATTCATTCACCCCAGGAGCGTTCCATTGATTCAGTCACAGAAATTTGGCATCTGGCTACTCAACCTGCATTTTTGTTATACATGGTAGCCGTGATAGCTGTAGTTCTGGTGCTAATCTTGCACTTTGTACCACGCTATGGACACACAAACATATTAGTGTATACGGGCATTTGTTCTCTAATGGGCTCAATAACGGTCATGAGTATAAAAGCCATGGGAATTGCCATAAAGCTTACCATAGAGGGAACAAATCAACTAGTTTACCCTGCAACATGGTTCTTTACTATGATGGCAATTACATGTGTTGTAATGCAACTGAATTATTTAAACAAGGCTCTTGATACTTTCAATACTGCCGTGGTATCTCCTATCTACTATGTTATGTTCACAACATTGACCATACTTGCAAGTGTTATCATGTTTAAGGATTGGGCTGGTCAAAGCGCGAGCAGCATAGTGTCAGAGATTTGTGGTTTAATTACTATCCTTTCAGGAACAATCATATTGCATGTAACAAAGGACTCTGACAAAAGCTCATCAACAAGTCATTATCAGCAGATGTCTATGCACCACTCTCACCTTCGTTGCCTACATGTCACTGCCAAGAAAACGAGGAGTTGA___TTAAGTGCACAGAGGATAATTGTATATCTACATT

Fln Alignment:

Contig10610___MSLVSSAFIGASFLIXXXXXXXXXXXXXXXXXXGYTYLLEPLWWAGMITMIMGEAANFVAYVFAPAVLVTPLGAITIIVSAVLAHFILKETLHKMGMLGCLMCIVGSTVIVIHSPQERSIDSVTEIWHLATQPAFXXXXXXXXXXXXXXXLHFVPRYGHTNILVYTGICSLMGSITVMSIKAMGIAIKLTIEGTNQLVYPATWFFTMMAITCVVMQLNYLNKALDTFNTAVVSPIYYVMFTTLTILASVIMFKDWAGQSASSIVSE
D7U595__________________LAMASSAFIGSSFILKKKGLKRAADSGTRAGVGGYTYLLEPLWWAGMVLMIVGEVANFVAYVYAPAVLVTPLGALSIIISAILAHFMLKERLQKMGVLGCVSCIVGSVVIVIHAPQEHTPNSVQEIWALATQPAFLIYVAATLSAVLALILYFEPRYGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLEGISQVAYPQTWFFLTVAAVCVITQLNYLNKALDTFNAAIVSPIYYVMFTTLTISASAIMFKDWSGQNASSIASE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
380	66			33	0.997452
382	66			33	0.997452
501		80		20	0.995493
502	80		20		0.995493
503		80		20	0.995493
555			50	50	1.0
556	50			50	1.0
754			75	25	0.996473
755		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain