SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10560

Length: 2984 nt

UniGene Fasta

>biog3_v1.0_unigene10560
AATACAACGCAGAGTACGGTGTCTGGTCCTTCGTTTGGTAGCCTTGACAATTGATCGAAACCTTTGAAAACCTCTGCAACTCTTCTCTCGTGCTCGTGGTGGCCATGGCGCCCGCTCCCGCTCAGAATGGACATGTGGAGCAGCCGGCTCCTCCAAAGGCCCCCTCCAAGGATCTCAAGAAGGCCAAGGACGAGAAGAAAGAGGAAGACCTGTCCGACGAAGATTTGGCTTTGAAACAGCAGTTAGAGCTGTATGTTGAAAGAGTTCAAGATGTAGATCCGGGGGTGCAGAAGTTGGCTCTGGAGAGTATGAGGCAAGAAATTCGAACTGCAACGAGCTCTATGACATCCGTACCTAAACCTCTGAAATTTCTTCGACCTCATTATGGTACATTAAAAGCATATTATGAAACAATGGCAGATACTGATGTGAAGAATTACCTGGCAGATATCTTATCAGTTTTGGCTTTGACGATGTCTGCAGAAGGGGAAAGGGAAAGTTTAAAGTTTAGGTTGCTTGGCTCCAAGGGAGATATTGGTTCCTGGGGTCATGAATATGTTCGGAATCTTGCTGGAGAAATTGCACAAGAATACCAGAAGCGGCAGATGGAAGAGGCACATGTTGATGATCTGATGGATCTGGTTCAACAAATTGTCTCTTTTCATGTGAAGCACAATGCAGAACCAGAAGCAGTTGACCTTTTAATGGAGGTGGAAGAGTTAGATATGTTAACTGATCATATTGACGCCACAAATTATAAGCGTACATGTTTGTACTTGACAAGCTTTGCAAGTTATGTTCCAGGACCTGATGACATGTTAGTCCTCGACATAGCTTATTCAATTTATACAAAATTTGGAGAATACACAAATGCACTTAGAGTGGCCTTATGTATGCACAACATGCAGTATGTGAAGGCCATATTCACTGCTTGTGTAGATCCTCTTCAGAAGAAGCAGCTCTGCTACATTTTGGCCCGACAGGGAGTGACATTGGAGCTAGATGATGAAATGACAAATGGCAATGAAGAGCAACGGGAACTACTACAGGAAATAATTAATAACATAAAACTAAGTGAGGGTTTTCTGACTCTAGCACGTGATCTTGAGATAATGGAGTCAAAGTCCCCTGAGGATATCTATAAGGCACATTTGATTGATGGGCGTGCAAGTGCGGGTGCAAGTGTTGATTCTGCCCGTCAGAACTTGGCTGCCACATTTGTGAATGCATTCGTCAATGCTGGATTTGGTCAAGACAAATTAATGACTGCTGCTACGGAATCGTCTAGTGGTGGCAGCACTGCAAATTGGCTTTTTAAGAACAAAGAACATGGGAAAGCTAGTGCTGCTGCCAGTTTGGGTTTGATTCTCCTTTGGGATGTTGATGCTGGCCTCACACAAATAGACAAGTATTTCAGTAGCAATGATAATCATGCGATTGCTGGAGCTTTGCTCGCAGTTGGTATTGTAAATTGTGGCATCCAAAACGAATGTGATCCTGCGTACGCACTTCTTGCAGAGTACGTCAGTAAGGACGAGTCAAACATTCGAATTGGGGCAATTATGGGCCTTGGGTTAGCATATGCTGGTTCTCAAAAGGAGGATGTGCTTAAACTTCTTTCTCCTATTTTAGTAGACTCTAAGGTTCCGATAGATGTGATTGCCTTCACTGCTATATCTCTTGGATTGATCTATGTTGGATCTTGCAATGATGAAGTGGCTCAGTCAATTATTATTGCCTTGATGGAGAGAAGTGATTCTGAGCTAGGAGAGCCACTTACTCGATTTCTTTGTTTAGGCCTTGGGCTCTTATATCTTGGAAAGCAGGAAAAAGTTGATGCAACTTTGGAAGTAGCAAAGACATTCAATGAGAAAATATCAAGATATTGTCAAGTTACGCTGGAGTCCTGTGCATATGCTGGGACTGGAAATGTTCTCAAGGTACAAAGTCTTCTTGGTCTTTGTGCCGAACATCTAGAGAAGGGTGAGAGTCATCAGGCACCAGCTGTAATTGGTATTGCAATGGTAGCTATGGCAGAGGAACTTGGCCTTGAAATGGCTATACGTTCCTTGGAGCATCTCTTGCAATATGGAGAGCAAAATATCAGGAGATCTGTCCCTTTGGCTCTTGGCCTATTGTCAATATCAAATCCTAAGGTTAATGTGATGGACACATTAAGTAGACTTAGTCATGACACTGATTCGGAAGTTGCTATGGCAGCAACGTTGGCTCTGGGATTAATTGGTGCAGGAACGAATAATGCTCGAATAGCTGGCATGCTTCGAAATCTTTCGAGCTACTATTACAAAGATCCTAGTCTCCTTTTCTGTGTTCGTATTGCTCAAGGTTTGGTGCATCTAGGAAAGGGGTTATTAACTCTGAATCCTTATCATTCAGACCGATTTCTTCTGTCACACTCTGCATTGGCTGGGATTGTAACTTTGCTCCATGCATGTTTGGACATGAAGAATATTATTTTGGGAAAATACCATTATGTACTCTACTTCCTTGTGTTGGCCATGCAGCCAAGGATGCTAATGACAGTGGACGAGAATTTGAAAGCTTTGTCAGTTCCGGTTCGAGTAGGGCAAGCTGTAGATGTTGTTGGTCAGGCTGGTCGCCCAAAGACTATAACTGGATTCCAGACACACACAACTCCTATTCTACTTGCAACTGGTGATAGAGCAGAACTAGCAACAGAAAAGTATATACCTCTATCTTCAGTGTTAGAGGGGTTTGTCATTTTGAAAGAAAATCCTGATTATCAGCATGACAACCGTACCAGCTAATTGAATAAAATCTGATTGTTTTGAATGGATGGATCAAAGGAAGTGACAGTTGATTCCTGAGTTGGAAGGGATTCAGAAGTATTTTCAATTCCTCTTCCAATGCTTAACTCCACATTTTCCATTTGGAAGCTCCTAGCTGGAGGTCATTTCTTTGTGTTCCTGGTTGGGCTTTTCGTTTACCAGATGTCAGAAATA

Ace file of the UniGene biog3_v1.0_unigene10560

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22663	184/185

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N1 [Arabidopsis thaliana] sp\|Q9SIV2.2\|RPN1A_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1A; AltName: Full=26S proteasome regulatory subunit RPN1 A; Short=AtRPN1a; AltName: Full=26S proteasome regula	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	protein catabolic process	GO:0030163	Biological Process	89%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	89%
Blast2go	ubiquitin binding	GO:0043130	Molecular Function	89%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit	IPR016643	-	0.0	-
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRR7

Fln msg:

Fln protein: MAPAPAQNGHVEQPAPPKAPSKDLKKAKDEKKEEDLSDEDLALKQQLELYVERVQDVDPGVQKLALESMRQEIRTATSSMTSVPKPLKFLRPHYGTLKAYYETMADTDVKNYLADILSVLALTMSAEGERESLKFRLLGSKGDIGSWGHEYVRNLAGEIAQEYQKRQMEEAHVDDLMDLVQQIVSFHVKHNAEPEAVDLLMEVEELDMLTDHIDATNYKRTCLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNMQYVKAIFTACVDPLQKKQLCYILARQGVTLELDDEMTNGNEEQRELLQEIINNIKLSEGFLTLARDLEIMESKSPEDIYKAHLIDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTAATESSSGGSTANWLFKNKEHGKASAAASLGLILLWDVDAGLTQIDKYFSSNDNHAIAGALLAVGIVNCGIQNECDPAYALLAEYVSKDESNIRIGAIMGLGLAYAGSQKEDVLKLLSPILVDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTRFLCLGLGLLYLGKQEKVDATLEVAKTFNEKISRYCQVTLESCAYAGTGNVLKVQSLLGLCAEHLEKGESHQAPAVIGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRSVPLALGLLSISNPKVNVMDTLSRLSHDTDSEVAMAATLALGLIGAGTNNARIAGMLRNLSSYYYKDPSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSHSALAGIVTLLHACLDMKNIILGKYHYVLYFLVLAMQPRMLMTVDENLKALSVPVRVGQAVDVVGQAGRPKTITGFQTHTTPILLATGDRAELATEKYIPLSSVLEGFVILKENPDYQHDNRTS*

Protein Length: 896

Fln nts: AATACAACGCAGAGTACGGTGTCTGGTCCTTCGTTTGGTAGCCTTGACAATTGATCGAAACCTTTGAAAACCTCTGCAACTCTTCTCTCGTGCTCGTGGTGGCC_-_ATGGCGCCCGCTCCCGCTCAGAATGGACATGTGGAGCAGCCGGCTCCTCCAAAGGCCCCCTCCAAGGATCTCAAGAAGGCCAAGGACGAGAAGAAAGAGGAAGACCTGTCCGACGAAGATTTGGCTTTGAAACAGCAGTTAGAGCTGTATGTTGAAAGAGTTCAAGATGTAGATCCGGGGGTGCAGAAGTTGGCTCTGGAGAGTATGAGGCAAGAAATTCGAACTGCAACGAGCTCTATGACATCCGTACCTAAACCTCTGAAATTTCTTCGACCTCATTATGGTACATTAAAAGCATATTATGAAACAATGGCAGATACTGATGTGAAGAATTACCTGGCAGATATCTTATCAGTTTTGGCTTTGACGATGTCTGCAGAAGGGGAAAGGGAAAGTTTAAAGTTTAGGTTGCTTGGCTCCAAGGGAGATATTGGTTCCTGGGGTCATGAATATGTTCGGAATCTTGCTGGAGAAATTGCACAAGAATACCAGAAGCGGCAGATGGAAGAGGCACATGTTGATGATCTGATGGATCTGGTTCAACAAATTGTCTCTTTTCATGTGAAGCACAATGCAGAACCAGAAGCAGTTGACCTTTTAATGGAGGTGGAAGAGTTAGATATGTTAACTGATCATATTGACGCCACAAATTATAAGCGTACATGTTTGTACTTGACAAGCTTTGCAAGTTATGTTCCAGGACCTGATGACATGTTAGTCCTCGACATAGCTTATTCAATTTATACAAAATTTGGAGAATACACAAATGCACTTAGAGTGGCCTTATGTATGCACAACATGCAGTATGTGAAGGCCATATTCACTGCTTGTGTAGATCCTCTTCAGAAGAAGCAGCTCTGCTACATTTTGGCCCGACAGGGAGTGACATTGGAGCTAGATGATGAAATGACAAATGGCAATGAAGAGCAACGGGAACTACTACAGGAAATAATTAATAACATAAAACTAAGTGAGGGTTTTCTGACTCTAGCACGTGATCTTGAGATAATGGAGTCAAAGTCCCCTGAGGATATCTATAAGGCACATTTGATTGATGGGCGTGCAAGTGCGGGTGCAAGTGTTGATTCTGCCCGTCAGAACTTGGCTGCCACATTTGTGAATGCATTCGTCAATGCTGGATTTGGTCAAGACAAATTAATGACTGCTGCTACGGAATCGTCTAGTGGTGGCAGCACTGCAAATTGGCTTTTTAAGAACAAAGAACATGGGAAAGCTAGTGCTGCTGCCAGTTTGGGTTTGATTCTCCTTTGGGATGTTGATGCTGGCCTCACACAAATAGACAAGTATTTCAGTAGCAATGATAATCATGCGATTGCTGGAGCTTTGCTCGCAGTTGGTATTGTAAATTGTGGCATCCAAAACGAATGTGATCCTGCGTACGCACTTCTTGCAGAGTACGTCAGTAAGGACGAGTCAAACATTCGAATTGGGGCAATTATGGGCCTTGGGTTAGCATATGCTGGTTCTCAAAAGGAGGATGTGCTTAAACTTCTTTCTCCTATTTTAGTAGACTCTAAGGTTCCGATAGATGTGATTGCCTTCACTGCTATATCTCTTGGATTGATCTATGTTGGATCTTGCAATGATGAAGTGGCTCAGTCAATTATTATTGCCTTGATGGAGAGAAGTGATTCTGAGCTAGGAGAGCCACTTACTCGATTTCTTTGTTTAGGCCTTGGGCTCTTATATCTTGGAAAGCAGGAAAAAGTTGATGCAACTTTGGAAGTAGCAAAGACATTCAATGAGAAAATATCAAGATATTGTCAAGTTACGCTGGAGTCCTGTGCATATGCTGGGACTGGAAATGTTCTCAAGGTACAAAGTCTTCTTGGTCTTTGTGCCGAACATCTAGAGAAGGGTGAGAGTCATCAGGCACCAGCTGTAATTGGTATTGCAATGGTAGCTATGGCAGAGGAACTTGGCCTTGAAATGGCTATACGTTCCTTGGAGCATCTCTTGCAATATGGAGAGCAAAATATCAGGAGATCTGTCCCTTTGGCTCTTGGCCTATTGTCAATATCAAATCCTAAGGTTAATGTGATGGACACATTAAGTAGACTTAGTCATGACACTGATTCGGAAGTTGCTATGGCAGCAACGTTGGCTCTGGGATTAATTGGTGCAGGAACGAATAATGCTCGAATAGCTGGCATGCTTCGAAATCTTTCGAGCTACTATTACAAAGATCCTAGTCTCCTTTTCTGTGTTCGTATTGCTCAAGGTTTGGTGCATCTAGGAAAGGGGTTATTAACTCTGAATCCTTATCATTCAGACCGATTTCTTCTGTCACACTCTGCATTGGCTGGGATTGTAACTTTGCTCCATGCATGTTTGGACATGAAGAATATTATTTTGGGAAAATACCATTATGTACTCTACTTCCTTGTGTTGGCCATGCAGCCAAGGATGCTAATGACAGTGGACGAGAATTTGAAAGCTTTGTCAGTTCCGGTTCGAGTAGGGCAAGCTGTAGATGTTGTTGGTCAGGCTGGTCGCCCAAAGACTATAACTGGATTCCAGACACACACAACTCCTATTCTACTTGCAACTGGTGATAGAGCAGAACTAGCAACAGAAAAGTATATACCTCTATCTTCAGTGTTAGAGGGGTTTGTCATTTTGAAAGAAAATCCTGATTATCAGCATGACAACCGTACCAGCTAA___TTGAATAAAATCTGATTGTTTTGAATGGATGGATCAAAGGAAGTGACAGTTGATTCCTGAGTTGGAAGGGATTCAGAAGTATTTTCAATTCCTCTTCCAATGCTTAACTCCACATTTTCCATTTGGAAGCTCCTAGCTGGAGGTCATTTCTTTGTGTTCCTGGTTGGGCTTTTCGTTTACCAGATGTCAGAAATA

Fln Alignment:

Contig10560___QNGHVEQPAPPKAPXXXXXXXXXXXXXXXXXXXXXXXXQQLELYVERVQDVDPGVQKLALESMRQEIRTATSSMTSVPKPLKFLRPHYGTLKAYYETMADTDVKNYLADILSVLALTMSAEGERESLKFRLLGSKGDIGSWGHEYVRNLAGEIAQEYQKRQMEEAHVDDLMDLVQQIVSFHVKHNAEPXXXXXXXXXXXXXXXTDHIDATNYKRTCLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNMQYVKAIFTACVDPLQKKQLCYILARQGVTLELDDEMTNGNEEQRELLQEIINNIKLSEGFLTLARDLEIMESKSPEDIYKAHLIDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMXXXXXXXXXXXXXNWLFKNKEHGKXXXXXXXXXXXXWDVDAGLTQIDKYFSSNDNHAIAGALLAVGIVNCGIQNECDPAYALLAEYVSKDESNIRIGAIMGLGLAYAGSQKEDVLKLLSPILVDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTRFXXXXXXXXXXXKQEKVDATLEVAKTFNEKISRYCQVTLESCAYAGTGNVLKVQSLLGLCAEHLEKGESHQAPAVIGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRSVPLALGLLSISNPKVNVMDTLSRLSHDTDSEVXXXXXXXXXXXXXXXXXXRIAGMLRNLSSYYYKDPSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSHSALAGIVTLLHACLDMKNIILGKYHYVLYFLVLAMQPRMLMTVDENLKALSXXXXXXXXXXXXXXXXXPKTITGFQTHTTPILLATGDRAELATEKYIPLSSVLEGFVILKENPDYQHDNRTS
B8LRR7__________________QNGHVEQPAPPKVPSKDPKKTKDEKKEEDLSEEDLALKQQLELYVERVQDVDPGVQKLALESMRQEIRTATSSMTSVPKPLKFLRPHYGTLKAYYETMEDSDVKNYLADILSVLALTMSAEGERESLKFRLLGSKGDIGSWGHEYVRNHAGEIAQEYQKRQMEEAHVDDLMDLVQQIVSFHVKHNAEPEAVDLLMEVEELDMLTDHIDATNYKRTCLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNLQYVKAIFTACVDPLQKKQLCYILARQGVTLELDDEMTNGNEEQRELLQEIINNIKLSEGFLTLARDLEIMESKSPEDIYKAHLIDGRASAGASVDSARQNLAGTFVNAFVNAGFGQDKLMTAATESSSGGNTGNWLFKNKEHGKASAVASLGLILLWDVDAGLTQIDKYFSSNDNHAIAGALLAVGIVNCGIQNECDPAYALLAEYVSKDESNIRIGAIMGLGLAYAGSQKEEVLRLLSPILTDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTRFLCLGLGLLYLGKQEKVDATLEVAKTFNEKISRYCQVTLESCAYAGTGNVLKVQSLLGLCAEHLEKGESHQAPAVIGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRSVPLALGLLSISNPKVNVMDTLSRLSHDTDSEVAMAATLALGLIGAGTNNARIAGMLRNLSSYYYKDPSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSHSALAGIITLLHSCLDMKSIILGKYHYVLYFLVLAMQPRMLLTVDENLKPLSIPVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLATGDRAELATEKYIPLSSVLEGFVILKENPDYQHDNRTS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
265	33		66		0.997452
403	16			83	0.994512
570	60			40	1.0
610	20		80		0.995493
611	80	20			0.995493
613			80	20	0.995493
614	80			20	0.995493
666	25			75	0.996473
667	25		75		0.996473
669			75	25	0.996473
2378	20	80			0.995493
2380		80	20		0.995493
2387	10	90			0.90298
2388	10			90	0.90298
2390	90		10		0.90298
2716	16	83			0.999991
2717		16		83	0.999991
2735		16	83		0.994512
2736	16		83		0.994512
2759		85		14	0.993533
2907		20		80	0.995493
2908	20			80	0.995493
2950	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain