SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10554

Length: 1060 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10554

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10715	3/19
SustainPine v2.0	sp_v2.0_unigene25160	4/19
SustainPine v2.0	sp_v2.0_unigene28219	12/19

Source	Descriptions	Term	Type	Identity
AutoFact	developmentally regulated G-protein 1 [Arabidopsis thaliana] ref\|NP_001077555.1\| developmentally regulated G-protein 1 [Arabidopsis thaliana] gb\|AAF97313.1\|AC007843_16 GTP binding protein [Arabidopsis thaliana] gb\|AAX12862.1\| At1g17470 [Arabidopsis thalia	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	developmentally regulated g-protein 1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	GTP catabolic process	GO:0006184	Biological Process	92%
Blast2go	GDP binding	GO:0019003	Molecular Function	92%
Blast2go	GTPase activity	GO:0003924	Molecular Function	92%
Blast2go	GTP binding	GO:0005525	Molecular Function	92%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3		IPR002917	-	-
Sma3	TGS	IPR004095	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3	GTP1/OBG, conserved site	IPR006074	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACC2

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 350 - 369

Fln protein: MARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGDGFEVTKYGHGRVALIGFPSVGKSTLLTLLTGTLSEAASYEFTTLTCIPGVIHYNDAKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFKRKKTGGISFNSTMALTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYIKCVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYTKPQGQQPDFAEPFVLSTDRGGCTVEDLCNHIHKTLMKDVKYVLVWGTSAKHYPQRCGMAHILNDEDVVQ

Protein Length: 351

Fln nts: AATGTCGAG_-_ATGGCACGGACACAAAAGAATAAAGCTACAGAATACCATCTCGGGCAGCTTAAAGCTAAGATAGCGAAGCTGAGGACACAGCTATTGGAGCCACCGAAGGGTTCTAGTGGTGCTGGTGATGGTTTTGAAGTCACAAAATATGGTCATGGTCGTGTTGCTCTGATAGGATTCCCGAGTGTGGGGAAATCAACACTTCTTACTTTACTCACTGGAACTCTCTCAGAAGCAGCATCATATGAGTTCACAACACTTACTTGTATTCCTGGTGTCATACACTACAATGATGCTAAGATACAACTTCTTGATCTTCCTGGAATCATTGAAGGTGCTTCTGAAGGCAAGGGTCGTGGTCGACAGGTGATTGCGGTCGCAAAGTCTTCAGATCTAGTGTTAATGGTTCTTGATGCATCTAAAAGTGAGGGTCATCGACAAATTTTAACAAGGGAATTGGAAGCAGTGGGCTTGCGCTTAAACAAGAGGCCTCCTCAGATATATTTCAAGAGGAAAAAGACTGGTGGCATTTCCTTCAACAGCACAATGGCATTAACACATGTTGACGAAAAACTTTGTTATCAAATATTACATGAGTACAAGATCCACAATGCTGAGGTATTGTTCAGGGAAGATGCCACTGTTGATGATCTCATCGACGTCATTGAAGGGAACCGGAAATATATCAAATGTGTTTATGTTTATAATAAAATTGATGTTGTCGGTATTGATGATGTTGACCGGCTATCCCGGCAGCCAAATTCTATTGTCATTAGTTGCAATTTGAAGCTCAATCTTGATCGGTTACTTGCAAGAATGTGGGATGAAATGGGGTTAGTAAGAGTCTACACCAAACCTCAGGGACAGCAACCTGATTTTGCTGAACCTTTTGTCCTGTCTACGGACAGAGGTGGTTGTACAGTGGAAGATTTATGTAACCATATACACAAAACATTGATGAAGGATGTTAAATATGTACTAGTCTGGGGAACAAGTGCAAAGCATTATCCACAACGTTGTGGCATGGCACACATACTTAATGATGAGGATGTTGTACAGA

Fln Alignment:

Contig10554___EMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPK--GSSGAGDGFEVTKYGHGRVALIGFPSVGKSXXXXXXXXXXSEAASYEFTTLTCIPGVIHYNDAKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFKRKKTGGISFNSTMALTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYIKCVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYTKPQGQQPDFAEPFVLSTDRGGCTVEDLCNHIHKTLMKDVKYVLVWGTSAKHYPQRCGMAHILNDEDVVQ
D5ACC2__________________EMAKTQKNKATAHHLGLLKAKLAKLRREILAPPTKGGGGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVIRYRGAKLQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRIIEKELEGFGIRLNKEPPNLSFRRKDKGGINFTSTVANTLLDLETVKAICGEYRIHNADISLRYDASADDLIDVIEGSRIYMPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNMDGLLEKIWEYLNLTRIYTKPKGLNPDYEDPVILSSK--SRTVEDFCTRIHKDMLKQFKYALVWGSSAKHKPQRVGKDHELEDEDVVQ

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
531	16			83	0.994512
532	16			83	0.994512
534		83	16		0.994512
535		83		16	0.994512
642		85		14	0.993533
677	40	60			1.0
678			60	40	1.0
679			60	40	1.0
702		25	75		0.996473
703	25			75	0.996473
758	33		66		0.997452
759		66		33	0.997452
760		66	33		0.997452
761	66			33	0.997452
785	25			75	0.996473
786	25			75	0.996473
789	75			25	0.996473
846		40	60		1.0
847	40			60	1.0
848		60		40	1.0
915	33		66		0.997452
948	25	75			0.996473
949	75			25	0.996473
950		75	25		0.996473
951	75			25	0.996473
1054		33		66	0.997452
1055	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain