SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10542

Length: 826 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10542 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7964	18/19

Source	Descriptions	Term	Type	Identity
AutoFact	pre-mRNA-processing protein 40A [Arabidopsis thaliana] gb\|AEE32062.1\| pre-mRNA-processing protein 40A [Arabidopsis thaliana]	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	57%
Blast2go	pre-mrna-processing factor 40 homolog b-like	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	68%
Blast2go	RNA polymerase binding	GO:0070063	Molecular Function	68%
Blast2go	plastid	GO:0009536	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	FF domain	IPR002713	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
525	20	80			0.995493
554		83		16	0.994512
555	83		16		0.994512
556			83	16	0.994512
597	85			14	0.993533
599			85	14	0.993533
641	88		11		0.923564
642	11			88	0.923564
643		77		11	0.968132
644			11	88	0.923564
655			88	11	0.923564
664		12		87	0.992554
665	12		87		0.992554
679			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain