SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10519

Length: 337 nt

UniGene Fasta

>biog3_v1.0_unigene10519
AATGTAATGTTGGTGCTTCTTTACAATTTATATCGATTACAAGAAAGGTTGGAGATGTCCAACCATGGATGCTTGATATAAATCCAGATGAGGTTTTAGCAGTCAACTTTGCATTCCAACTGCATCACATGCCCGATGAAAGTGTGTCTACAATGAACCCACGTGACCGGCTTTTAAGGATGGTGAAGTCTCTCAACCCTAAAGTGGTCACAGTTGTAGAACAAGAGGTTAACACTAATACTGCACCTTTCTTACCCCGCTTCATGGAAGCATTAAACTATTACTCATCAGTGTTTGAGTCTCTAGATGCTACACTTAAAAGGGATAGCAGAACATT

Ace file of the UniGene biog3_v1.0_unigene10519

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8594	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Chitin-inducible gibberellin-responsive protein, putative n=1 Tax=Ricinus communis RepID=B9S2N0_RICCO	-	-	53%
FL-Next	tr=SCARECROW-like protein 1; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	32%
Blast2go	scarecrow-like protein 1-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	0.0	71%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A3E2G2

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 111 - 810

Fln protein: CNVGASLQFISITRKVGDVQPWMLDINPDEVLAVNFAFQLHHMPDESVSTMNPRDRLLRMVKSLNPKVVTVVEQEVNTNTAPFLPRFMEALNYYSSVFESLDATLKRDSRT

Protein Length: 112

Fln nts: AATGTAATGTTGGTGCTTCTTTACAATTTATATCGATTACAAGAAAGGTTGGAGATGTCCAACCATGGATGCTTGATATAAATCCAGATGAGGTTTTAGCAGTCAACTTTGCATTCCAACTGCATCACATGCCCGATGAAAGTGTGTCTACAATGAACCCACGTGACCGGCTTTTAAGGATGGTGAAGTCTCTCAACCCTAAAGTGGTCACAGTTGTAGAACAAGAGGTTAACACTAATACTGCACCTTTCTTACCCCGCTTCATGGAAGCATTAAACTATTACTCATCAGTGTTTGAGTCTCTAGATGCTACACTTAAAAGGGATAGCAGAACATT

Fln Alignment:

Contig10519___GASLQFISITRKVGDVQPWMLDINPDEVLAVNFAFQLHHMPDESVSTMNPRDRLLRMVKSLNPKXXXXXXXXXXXXXAPFLPRFMEALNYYSSVFESLDATLKRDSR
A3E2G2__________________GVPFEYQAIATKWENLDVEELGLRSDEVLVVNCLGRLRNLLDETVVQDSPRNIVLNKIRSMNPRVFIQGVVNGAYNASFFITRFREALFHYSALFDALETTVPRDNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain