SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10506

Length: 1839 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10506

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16243	6/66
SustainPine v2.0	sp_v2.0_unigene16678	15/66
SustainPine v2.0	sp_v2.0_unigene24798	16/66
SustainPine v2.0	sp_v2.0_unigene30797	26/66

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BCL-2-associated athanogene 6 [Arabidopsis thaliana] gb\|AAC62882.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC10664.1\| BCL-2-associated athanogene 6 [Arabidopsis thaliana]	-	-	8.0e-25	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	bcl-2-associated athanogene 6	-	-	6.53758e-38	45%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	6.53758e-38	45%
Blast2go	response to stress	GO:0006950	Biological Process	6.53758e-38	45%
Blast2go	programmed cell death	GO:0012501	Biological Process	6.53758e-38	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW49

Fln msg: your sequence is longer than subject: 163 - 97

Fln protein: MISRKRGRRICRSFRNTLSGFRDLCLIAMRRDIPCIGFLGTENPQRVIENRRFPAIGFLWIRTRHLVIGKLKTKVQRRDIPCIGFLGAENPQRVTENGRLQVIGFLSIRTRDLVIGKLKMKTRSFHHFPSSGFRESLKEKEMQRCVTLRKRPRKQRDEIPRM*

Protein Length: 164

Fln nts: GGTGATTGTCGAACCAAGAACTAAGAAGTTAGAAGCGCGCACTCTGGGAATTGTGGATCGCTCGAATCGATTATAGTCAAATCAGGCATTGTGGTATAGTGGGGAATTCGATCATTTATCCGTTATCTAGCAGGAGTTGTGGTATCGATTTTCATCAATTTCTGTGCTTATTGGAGATAAGTTTAGCGGACGAAGTGCCGCTTGATTGTTTGAAGCTGCAAAATGAGTCCTATGTACGCGTATGGCGAACCCAGCCCACACACCTATCCTCAATATTACTGGGCTACGCCAAATGGACCACGCCCCCAGCCAATTTCAGCGCCGTGGACAGAACCTTATTATCGTTATAGAGAATCGCCGGGGAATTATTATGGTCATCCGCACGATTGTGGCTTTCAGTATGGGGGCGGTCCGTACTGGCATTGTCCTCCCGACTATGAATTTTACAGGCCTAAGTTCAGGAATTATGAACGAGATGGTAGAGATTTTAGGCCTTACACCTGTGCTCCTCCGCCTTCTTCTTTTGTATATAGTCGACCTTTCAATCCCAATGAACAATTCCGGCACCCAGATGATTACCCGATGAGATTCGTACCCACGACTGGTTATGATCGCTTTGGCCCTTATCCCTTTGAACGGCATTGCTGCGGGTGCCCGAATCACGTAGGTTATCCTAAGCCGGTTGAGAGGATAAGTGATGACGTTGTTGATGAAAAACGAATTAAGGATTCTAAGGACAGTGATGGTAAATCGATGACGG_-_ATGATATCGAGAAAAAGAGGTCGGAGAATTTGCAGGAGCTTCCGGAACACGTTGTCTGGATTCCGAGATCTTTGTCTGATCGCAATGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAACAGAAAATCCACAGAGGGTGATCGAGAACAGGCGTTTCCCGGCTATTGGATTCCTCTGGATTCGAACACGGCATCTCGTGATCGGAAAACTGAAGACGAAAGTGCAGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAGCAGAAAATCCACAGAGGGTGACCGAGAACGGCCGTTTACAGGTTATTGGATTCCTTTCGATTCGAACACGGGATCTCGTGATCGGAAAACTGAAGATGAAAACGCGAAGTTTCCATCATTTCCCGTCTTCTGGATTCCGAGAAAGTTTGAAGGAGAAGGAGATGCAAAGGTGCGTAACCCTCCGCAAGAGACCAAGAAAACAGAGGGACGAGATACCTCGAATGTAG___AAAACATCCAACGAAAGTCCAGAGAAACAAATGGAGAAGAATCCGAGGTATCAAACGAGGGCATTAATGGTAGGTCTGCACAGCAGAAAAAGGAAGCTGCAGCGGCGAGAGAAATTCCTGTGAAACAGCTTGGGGAAGAAGGAAAACCTTCACAAGCCCCAAAAGAGGAGAGGGTTTCGAAGGTTTCAGATGATAATCATCACGCGAAGAAGGCATCTTCGCCCCGGGCTTCCAAACTTCCTCCTGTGTGTCTGAGGGTCGATCCTCTGCCTAGCAAGAAAACGAATGGGACGAGCTCTCCCAGGTCTCCTAGTCCTCCTCACAAAGAGGAAGAAAACAAAGATAAGGTAGCTGTAAAGGCCGAAGGAAATGCAAATGCCAATAGGACAAGCTCTTCCAGGTCCCCCAGCCCTCCTCGTAAAGTGGAAGAAAGCAAGGATAAGGTCGCTGTAAAGGCTGAAGGAAATCCAAATAACAGTGCTTCAAAAGTTGATACAGAAATAAATAAGGATGAACAGGAATCCGATGCCAGTGCTTCAAATGTTGGTATAGAAACCAAAAGAATGAACAGCAATCCAATCTGCAAGGTG

Fln Alignment:

Contig10506___LSGFRDLCLIAMRRDIPCIGFLGTENPQRVIENRRFPAIGFLWIRTRHLVIGKLKTKVQRRDIPCIGFLGAENPQRVTENGRLQVIGFLSIRTRDLVIGKLKMKTRSFHHFPSSGFRESLKEKEMQR
A9NW49__________________LSGFRDLCLIAMR-----------------------------------------------RNIPCIGFLGIENPPRVAENGRIPVIGFLWIRTRDLVIGKLKMKMRSYHHFPSSGFRQSLKEKGTRR

SNPs (tot: 124)

Position	A %	C %	G %	T %	Probability
69		66	33		0.997452
70			66	33	0.997452
138			50	50	1.0
161		50		50	1.0
182	33		66		1.0
184			66	33	0.997452
197		33		66	1.0
218		14		85	0.993533
262	12	87			0.992554
265		87		12	0.992554
287	87	12			0.992554
297			85	14	0.993533
304		85		14	0.993533
322			85	14	0.993533
330		85		14	0.993533
381		85		14	0.993533
394		85		14	0.993533
400	20		80		0.995493
408	20		80		0.995493
410	20		80		0.995493
411			80	20	0.995493
415			25	75	0.996473
431		25		75	0.996473
434	25		75		0.996473
436		75	25		0.996473
463	16		83		0.994512
464	83	16			0.994512
500	75	25			0.996473
502		75		25	0.996473
504	75		25		0.996473
511		50		50	1.0
527	50		50		1.0
529	25		75		0.996473
532		75		25	0.996473
552	50		50		1.0
599	33		66		0.997452
623	33	66			1.0
625		33		66	1.0
640	40		60		1.0
651			60	40	1.0
655		60	40		1.0
669		80	20		0.995493
675	20	80			0.995493
676		40		60	1.0
678	80			20	0.995493
679			80	20	0.995493
691			75	25	0.996473
697	25			75	0.996473
698		25	75		0.996473
701			75	25	0.996473
795	20		80		0.995493
796		80	20		0.995493
797	80		20		0.995493
799	80		20		0.995493
810	20	80			0.995493
811		20	80		0.995493
827	20		80		0.995493
845	25		75		0.996473
862		25	75		0.996473
870		75	25		0.996473
896			80	20	0.995493
897	80			20	0.995493
910	75		25		0.996473
914		50	50		1.0
925		33		66	1.0
926	33			66	0.997452
938		60		40	1.0
959		66	33		1.0
977			85	14	0.993533
978	85		14		0.993533
979		85		14	0.993533
984	28		71		1.0
992		14	85		0.993533
994			85	14	0.993533
995	85			14	0.993533
1008	83			16	0.994512
1014		16		83	0.994512
1023	14		85		0.993533
1039		12	87		0.992554
1040	12		87		0.992554
1041			87	12	0.992554
1072		25	75		1.0
1092		83		16	0.994512
1093			83	16	0.994512
1099	20			80	0.995493
1101	20		80		0.995493
1103			80	20	0.995493
1172	20		80		0.995493
1173	80	20			0.995493
1175			80	20	0.995493
1176			80	20	0.995493
1183	75		25		0.996473
1195	25		75		0.996473
1197	25		75		0.996473
1198	25			75	0.996473
1230		25	75		0.996473
1238	25		50		0.995533
1264	75		25		0.996473
1273			25	75	0.996473
1275	66		33		0.997452
1288	40		60		1.0
1293			60	40	1.0
1299	60		40		1.0
1300		20		80	0.995493
1303		40		60	1.0
1310		33	66		0.997452
1326		33		66	1.0
1398		83	16		0.994512
1403	83		16		0.994512
1407		20	80		0.995493
1411		80	20		0.995493
1412	80		20		0.995493
1453	50		50		1.0
1456		50		50	1.0
1461	50		50		1.0
1462	50	50			1.0
1472			66	33	0.997452
1688		33	66		0.997452
1690	66		33		0.997452
1697		66		33	0.997452
1719		33	66		0.997452
1725	66		33		0.997452
1726	33	66			0.997452
1749	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain