SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10492

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10492
TGTTGTACAGGTGATCTATAGTCGAATTAATTCGTATGAAAGTGCCGAGGATCTGAAGGCTGATCTGAGGGCATTGTTTAGTCCATTTCAATCAGCTACCCAGGGCATTCTCTGGATTGCTGGACAGATGGAACCGAATAAATTGAAGTTGGCAACGTCACCGTCAACAACAGCAGTGCAAAACAGGGTTCTTCTAAGCAGCTGCAAAACATGGCTCTCTGCCCTCTGAGATTGAACAGACACAAGATTTAGAGCCTGTCAGCGACACTGATACTGAAACTGAGATGCCGAATGCCTCTCAGCAGGAACTGTAATTAAGACCATTGAGTTTCAGTAATCTGATATAACACTTTGACGAAGCATCATAAAATCCCAGAGTGTAAGCCTCTTCCGCTGTATTTTCCTGTGGCCACTGAATTCATATATTAACCTTTGCTTT

Ace file of the UniGene biog3_v1.0_unigene10492 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1754	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	WS0273.BR_F03 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS0273_F03 3, mRNA sequence.	-	-	91%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	42%
Blast2go	protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rhodanese-like	IPR001763	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A9SC57

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 62 aas, putative chimeric sequence, your sequence is shorter than subject: 76 - 783

Fln protein: VVQVIYSRINSYESAEDLKADLRALFSPFQSATQGILWIAGQMEPNKLKLATSPSTTAVQNRVLLSSCKTWLSAL*

Protein Length: 77

Fln nts: TGTTGTACAGGTGATCTATAGTCGAATTAATTCGTATGAAAGTGCCGAGGATCTGAAGGCTGATCTGAGGGCATTGTTTAGTCCATTTCAATCAGCTACCCAGGGCATTCTCTGGATTGCTGGACAGATGGAACCGAATAAATTGAAGTTGGCAACGTCACCGTCAACAACAGCAGTGCAAAACAGGGTTCTTCTAAGCAGCTGCAAAACATGGCTCTCTGCCCTCTGA___GATTGAACAGACACAAGATTTAGAGCCTGTCAGCGACACTGATACTGAAACTGAGATGCCGAATGCCTCTCAGCAGGAACTGTAATTAAGACCATTGAGTTTCAGTAATCTGATATAACACTTTGACGAAGCATCATAAAATCCCAGAGTGTAAGCCTCTTCCGCTGTATTTTCCTGTGGCCACTGAATTCATATATTAACCTTTGCTTT

Fln Alignment:

Contig10492___QVIYSRINSYESAEDLKADLRALF---------------------------SPFQSATQGILWIAGQMEPNKLKLATSPSTTAVQNRVLLSSCK
A9SC57__________________QAIYTRANSYESLEDAKADLRYLHCPQGFYVKTSTVRNARVSLRFFCRLLQKPFKSIGDRILWLVGQVQPATLQLATAPSTLAVQDRVLQAAAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain