SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10450

Length: 705 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10450 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene596	2/4
SustainPine v2.0	sp_v2.0_unigene33791	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp\|A9LNK9.1\|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb\|ABX260	-	-	60%
FL-Next	Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30	-	-	73%
Blast2go	cleavage and polyadenylation specificity factor cpsf30	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	70%
Blast2go	endonuclease activity	GO:0004519	Molecular Function	70%
Blast2go	RNA binding	GO:0003723	Molecular Function	70%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	70%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	70%
Blast2go	mRNA cleavage and polyadenylation specificity factor complex	GO:0005847	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	YTH domain	IPR007275	-	-
Sma3		IPR015706	-	-

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain