SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10438

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10438
GCCATTATCTAGCAACTGGGAATGGATATGGTACGTGTTTTCACACCAAAGTTATCAAGACCAGAGCAGTTAGAGCGAATTGCAGCTGGAGAAATCCCGAGTGTTAGTGGAATCCCCCAGCATTTCTGAAACGTTCGCCAATCTTAAGAAGCGTGGAAAGGTAGCTCTCGTGCCTTACATAACTGCAGGGGATCCTGATCTATTAACTACAGCCAAGCACTCGAAGTGCTGGATTCATGCGGGGCTGATATAATAGAGCTGGGAGTGCCATACTCTGATCCTCTAGCTGATGGGCCAGTCATACAGGCAGCTGCGACAAGAGCTCTACAAAAGGGTACAAACTTTGATGCAGTTATTTCTATGCTTAGAGAGGTGATTCCACAATTGAAAGCTCCACTTGTGTTGTTTTCTTACTACAATCCAATCTTAAAGCATGGCCCAGAAAGCTTCATGCATACCATCAAATCAGTAGGGGTTCGTGGTCTTGTACTCCCAGATGTTCCACATT

Ace file of the UniGene biog3_v1.0_unigene10438 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3026	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Trytophan synthase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9S4R8_RICCO	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Tryptophan synthase, alpha chain	IPR002028	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Tryptophan synthase, alpha chain, active site	IPR018204	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABD1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 137 aas, your sequence is shorter than subject: 169 - 350

Fln protein: AII*QLGMDMVRVFTPKLSRPEQLERIAAGEIPSVSGIPQHF*NVRQS*EAWKGSSRALHNCRGS*SINYSQALEVLDSCGADIIELGVPYSDPLADGPVIQAAATRALQKGTNFDAVISMLREVIPQLKAPLVLFSYYNPILKHGPESFMHTIKSVGVRGLVLPDVPH

Protein Length: 170

Fln nts: GCCATTATCTAGCAACTGGGAATGGATATGGTACGTGTTTTCACACCAAAGTTATCAAGACCAGAGCAGTTAGAGCGAATTGCAGCTGGAGAAATCCCGAGTGTTAGTGGAATCCCCCAGCATTTCTGAAACGTTCGCCAATCTTAAGAAGCGTGGAAAGGTAGCTCTCGTGCCTTACATAACTGCAGGGGATCCTGATCTATTAACTACAGCCAAGCACTCGAAGTGCTGGATTCATGCGGGGCTGATATAATAGAGCTGGGAGTGCCATACTCTGATCCTCTAGCTGATGGGCCAGTCATACAGGCAGCTGCGACAAGAGCTCTACAAAAGGGTACAAACTTTGATGCAGTTATTTCTATGCTTAGAGAGGTGATTCCACAATTGAAAGCTCCACTTGTGTTGTTTTCTTACTACAATCCAATCTTAAAGCATGGCCCAGAAAGCTTCATGCATACCATCAAATCAGTAGGGGTTCGTGGTCTTGTACTCCCAGATGTTCCACATT

Fln Alignment:

Contig10438___QLGMDMVRVFTPKLSRPEQLERIAAGEIPS---VSGIPQHF*NVRQS*EAWKGSSRALHNCRGS*SINYSQALEVLDSCGADIIELGVPYSDPLADGPVIQAAATRALQKGTNFDAVISMLREVIPQLKAPLVLFSYYNPILKHGPESFMHTIKSVGVRGLVLPDVP
D5ABD1__________________RLGMDM-DVFHTKVIKTRTARAIAAGEIASGVESPSISETFANLKKR---GKVALVPYITAGDPDLLTTAKALKVLDSCGADIIELGVPYSDPLADGPVIQAAATRALQKGANFDAVISMLREVIPQLKAPLVLFSYYNPILKRGPESFMDTIKSVGVRGLVVPDVP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
417		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain