SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10330

Length: 494 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10330
AATGTATTTTATGTTATTGGGGGGATGTCAAGTAATATGACTTCCGATTCTCTCACTTGTGGAGAAGAATATAATCTCCAACAAAAAACATGGAGGAGGATTCCAAATATGTTTCCACCTGGAAATCGAGCTGCTCATGCACCTCCTTTGGTTGCTGTAGCAAACAATGAACTTTATGCAGTGGAGTATTCCCAAAATGAGATTAAAAAATATAACAAAGCTACCAATTCATGGCATACCCTCGGCACATTGCCTTTAAGGGCAGTCTCTGCCAATGGTTGGGGTCTAGCATTCAAGGCCTGTGGAAATGAGCTTATAGTCATTGGAGGACAGAGAGGGCAGGAAGGTGAAAGTATTGTATTGAATTCATGTCAGCCCACAGCTGACGGAAGACCGCCGGAATGGGAGGTGCTTGCTGTTAAACAGCATTCAGGAGCCTTTGTTTATAAACATGCGGTAATGGGTTGTTGACTATTCGTAGTTTGTATTACATT

Ace file of the UniGene biog3_v1.0_unigene10330 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1914	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein n=2 Tax=Populus trichocarpa RepID=B9IPW7_POPTR	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	f-box family protein	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	6-phosphogluconate-binding site	IPR006184	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	RINT-1/TIP-1	IPR007528	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQD3

Fln msg: your sequence is shorter than subject: 157 - 432

Fln protein: NVFYVIGGMSSNMTSDSLTCGEEYNLQQKTWRRIPNMFPPGNRAAHAPPLVAVANNELYAVEYSQNEIKKYNKATNSWHTLGTLPLRAVSANGWGLAFKACGNELIVIGGQRGQEGESIVLNSCQPTADGRPPEWEVLAVKQHSGAFVYKHAVMGC*

Protein Length: 158

Fln nts: AATGTATTTTATGTTATTGGGGGGATGTCAAGTAATATGACTTCCGATTCTCTCACTTGTGGAGAAGAATATAATCTCCAACAAAAAACATGGAGGAGGATTCCAAATATGTTTCCACCTGGAAATCGAGCTGCTCATGCACCTCCTTTGGTTGCTGTAGCAAACAATGAACTTTATGCAGTGGAGTATTCCCAAAATGAGATTAAAAAATATAACAAAGCTACCAATTCATGGCATACCCTCGGCACATTGCCTTTAAGGGCAGTCTCTGCCAATGGTTGGGGTCTAGCATTCAAGGCCTGTGGAAATGAGCTTATAGTCATTGGAGGACAGAGAGGGCAGGAAGGTGAAAGTATTGTATTGAATTCATGTCAGCCCACAGCTGACGGAAGACCGCCGGAATGGGAGGTGCTTGCTGTTAAACAGCATTCAGGAGCCTTTGTTTATAAACATGCGGTAATGGGTTGTTGA___CTATTCGTAGTTTGTATTACATT

Fln Alignment:

Contig10330___FYVIGGMSSNMTSDSLTCGEEYNLQQKTWRRIPNMFPPGNRAAHAPPLVAVANNELYAVEYSQNEIKKYNKATNSWHTLGTLPLRAVSANGWGLAFKACGNELIVIGGQRGQEGESIVLNSCQPTAD-GRPPEWEVLAVKQHSGAFVYKHAVMGC
B8LQD3__________________FYVIGGMSSPTVS--LTCGEEYNLQTRTWRRIRDMFPGGNRATHAPPLVAVVNNQLYAVEYSRNEVKKYNKENNTWSVVGRLPVRADSTNGWGLAFKACGNEIIVIGGQRGPEGECIVLNSWRPSPEAGRPIEWKVLAVKWHAGVFVYNCAVMSC

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
43		33		66	0.997452
44	33		66		0.997452
45	33			66	0.997452
287	25			75	0.996473
288	25			75	0.996473
290			33	66	0.997452
291	75			25	0.996473
299	20			80	0.995493
300	20			80	0.995493
303			80	20	0.995493
309		85	14		0.993533
471		50		25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain