SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10328

Length: 2142 nt

UniGene Fasta

>biog3_v1.0_unigene10328
CGGGCTACGACAAACATAGTTTGGCAAAGTGAAGTTGGATCTAGGGTTTTGCAGATACAGTCATGGCGATGCTACGTTGGGTTTTCTTGGCACTCATCTTGTTTTCGGTAGTAAATCTGTGTAAATCAGAAGCTGAAGAGCAAGGAAGCGAAGCAGTTCTTACGCTCGATGCAAACAGTTTCTCGGAGGCCCTTTCAAGCCATCCGTTCATTGTGGTGGAATTCTATGCCCCATGGTGTGGTCATTGTAAGCGTCTTGCTCCTGAGTATGAGAAAGCTGCAGCTATTCTTAAAAATCATGACCCACCCATTGTCTTGGCTAAAGTTGATGCTAATGAAGAAACAAATAAAGCTTTGGCTAGTGAATATGACGTAAAGGGATTTCCAACTCTGAAGATCATTCGGAAGGGAGGGTCAAGTGTTCAAGATTATAAAGGTCCTCGTGACGCAGATGGTATTGTGGAGTACTTGAAAAAGCAGGCTGGTCCCGCATCTGTGGAAATCAAATCTTCAGAAGAAGCCACTAGCCTTATTGGTGACAAGAAAGTATTCATAGTTGGAGTGTTCTCAAACTTTGAGGGCGAGGAATATACCAATTTCACTACTGTTACTGAGACAATGCGTTCAGAATATGATTTTGGTCATACATCCGATGCTACATTCCTTCCTTTGAAGAATTCTCCAATAAACCCACCATTTGTTCGGCTGTTTAAGCCTTTTGATGAGCAATATTCTGACTCCCAGGATTTCAATGTTGATTCATTAGAGAAGTTTGTTGAAGAAGCCAGTATTCCCCTTGTAGCAGTTCTGACTAAGGACCCTGAAAGTCATTCTCATGTTATCAAATTCTTCAACAGCCCAGATGCCAAGGCCTTGTTTTTTTGAATTTTACTGCGGACAATGCAGAGGAATTCAAAGTTACATATCAAGAGTTAGCAAAATCTCATAGAGGAAAAGGCATGAAATTTCTTCTTGCTGATCTTGAGGCTAGTCAAGGTGCTCTACAGTACTATGGAATTAAAGCTGAGGGTGTGCCATCGATCCTCATTCAAGATGCAGAAGATCGGAAGTATCTTAAGGAGACACTGGAAGTCGAACAGATATCATCTGTGTTGAAAGAATACTTTGATGGCACATTACCACAGTTCAGGAGATCTGAGCCCATCCCCGAAAAGAATGATGATCCTGTAAAAGTTGTTGTGGCAGATACTCTGCAAGAAATGGTCATCGATTCTGACAAAAATGTACTTGTGGAGTTCTATGCACCTTGGTGTGGACATTGCAAGAAACTGGCTCCCATTTTGGAAGAGGTGGCCATTTCCTATGAAAATGAAAGTGATGTGGTGATAGCTAAGCTGGATGCCACTAGTAATGATATTTCTACCAAGACCTTTAACATAAAGGGGTATCCAACATTATATATGGTCTCTGCAACTGGCAAGATTGTGAACTACGAGGGAGATAGATCAAAGGAGGACATCACCGACTTCATTAATAAAAACAGAGATTCTGTAAGCAAAGATGATATCGGAAAGGACGAATTGTGAAATGAGGACATGAAGTTCGTAACTGGGATGTGGCAGTATCCTGGGCCTAAGGAAACCGAGTTTTTTACCTTCTTTCAAGTGGCCCATTATTGGGGTCTTCGGAACTTTGTAAAGTTCAAGAGGAAATCATGTCTTGGTCTCTTGATCTTAGAGGACAACGCTTTTGCCATTAGCAGGAAAAGGATTAGCCCAATCTAAAGTAGGCTCTGCAGTCCTTAGTGCCTTTAATGAATTTAGTATGGTATTTATCTTTATAATAGTTAGATGAGAAGAAATAAGCATTCCCTTCGTTCGTGGATGGAATTACTCATATTTTTGTTTTGCCTATTTAAATTTCACATGGATTTTCTATAATCTATTGAACATCACATGATGAGAAGCTAGTCAAATTCATGTGTGAATGCAAGGAGTTGGGGAATTTTTCCTCAGTTTCCTAGTTGTAGTTTTCAAATTTCTTATGCTTCTATCATAAAGTCACAGGCAGAGTATGTACATGGTGTGACCGAATCTGCAGCATGGCTATGATTTATGTCAGAGGCTATGTATTCAACACCAGCAATGCATAAAAGCATACATTCGTTTACTTGAAAAACATT

Ace file of the UniGene biog3_v1.0_unigene10328

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15411	279/283
SustainPine v2.0	sp_v2.0_unigene60397	1/283

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Protein disulfide-isomerase; Short=PDI; Flags: Precursor gb\|AAB05641.1\| protein disulphide isomerase PDI [Ricinus communis] prf\|\|2206331A protein disulfide isomerase	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein disulfide isomerase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Disulphide isomerase	IPR005788	-	-
Sma3	Protein disulphide isomerase	IPR005792	-	-
Sma3		IPR017936	-	-
Sma3		IPR006662	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSV6

Fln msg:

Fln protein: MAMLRWVFLALILFSVVNLCKSEAEEQGSEAVLTLDANSFSEALSSHPFIVVEFYAPWCGHCKRLAPEYEKAAAILKNHDPPIVLAKVDANEETNKALASEYDVKGFPTLKIIRKGGSSVQDYKGPRDADGIVEYLKKQAGPASVEIKSSEEATSLIGDKKVFIVGVFSNFEGEEYTNFTTVTETMRSEYDFGHTSDATFLPLKNSPINPPFVRLFKPFDEQYSDSQDFNVDSLEKFVEEASIPLVAVLTKDPESHSHVIKFFNSPDAKALFF*

Protein Length: 275

Fln nts: CGGGCTACGACAAACATAGTTTGGCAAAGTGAAGTTGGATCTAGGGTTTTGCAGATACAGTC_-_ATGGCGATGCTACGTTGGGTTTTCTTGGCACTCATCTTGTTTTCGGTAGTAAATCTGTGTAAATCAGAAGCTGAAGAGCAAGGAAGCGAAGCAGTTCTTACGCTCGATGCAAACAGTTTCTCGGAGGCCCTTTCAAGCCATCCGTTCATTGTGGTGGAATTCTATGCCCCATGGTGTGGTCATTGTAAGCGTCTTGCTCCTGAGTATGAGAAAGCTGCAGCTATTCTTAAAAATCATGACCCACCCATTGTCTTGGCTAAAGTTGATGCTAATGAAGAAACAAATAAAGCTTTGGCTAGTGAATATGACGTAAAGGGATTTCCAACTCTGAAGATCATTCGGAAGGGAGGGTCAAGTGTTCAAGATTATAAAGGTCCTCGTGACGCAGATGGTATTGTGGAGTACTTGAAAAAGCAGGCTGGTCCCGCATCTGTGGAAATCAAATCTTCAGAAGAAGCCACTAGCCTTATTGGTGACAAGAAAGTATTCATAGTTGGAGTGTTCTCAAACTTTGAGGGCGAGGAATATACCAATTTCACTACTGTTACTGAGACAATGCGTTCAGAATATGATTTTGGTCATACATCCGATGCTACATTCCTTCCTTTGAAGAATTCTCCAATAAACCCACCATTTGTTCGGCTGTTTAAGCCTTTTGATGAGCAATATTCTGACTCCCAGGATTTCAATGTTGATTCATTAGAGAAGTTTGTTGAAGAAGCCAGTATTCCCCTTGTAGCAGTTCTGACTAAGGACCCTGAAAGTCATTCTCATGTTATCAAATTCTTCAACAGCCCAGATGCCAAGGCCTTGTTTTTTTGA___ATTTTACTGCGGACAATGCAGAGGAATTCAAAGTTACATATCAAGAGTTAGCAAAATCTCATAGAGGAAAAGGCATGAAATTTCTTCTTGCTGATCTTGAGGCTAGTCAAGGTGCTCTACAGTACTATGGAATTAAAGCTGAGGGTGTGCCATCGATCCTCATTCAAGATGCAGAAGATCGGAAGTATCTTAAGGAGACACTGGAAGTCGAACAGATATCATCTGTGTTGAAAGAATACTTTGATGGCACATTACCACAGTTCAGGAGATCTGAGCCCATCCCCGAAAAGAATGATGATCCTGTAAAAGTTGTTGTGGCAGATACTCTGCAAGAAATGGTCATCGATTCTGACAAAAATGTACTTGTGGAGTTCTATGCACCTTGGTGTGGACATTGCAAGAAACTGGCTCCCATTTTGGAAGAGGTGGCCATTTCCTATGAAAATGAAAGTGATGTGGTGATAGCTAAGCTGGATGCCACTAGTAATGATATTTCTACCAAGACCTTTAACATAAAGGGGTATCCAACATTATATATGGTCTCTGCAACTGGCAAGATTGTGAACTACGAGGGAGATAGATCAAAGGAGGACATCACCGACTTCATTAATAAAAACAGAGATTCTGTAAGCAAAGATGATATCGGAAAGGACGAATTGTGAAATGAGGACATGAAGTTCGTAACTGGGATGTGGCAGTATCCTGGGCCTAAGGAAACCGAGTTTTTTACCTTCTTTCAAGTGGCCCATTATTGGGGTCTTCGGAACTTTGTAAAGTTCAAGAGGAAATCATGTCTTGGTCTCTTGATCTTAGAGGACAACGCTTTTGCCATTAGCAGGAAAAGGATTAGCCCAATCTAAAGTAGGCTCTGCAGTCCTTAGTGCCTTTAATGAATTTAGTATGGTATTTATCTTTATAATAGTTAGATGAGAAGAAATAAGCATTCCCTTCGTTCGTGGATGGAATTACTCATATTTTTGTTTTGCCTATTTAAATTTCACATGGATTTTCTATAATCTATTGAACATCACATGATGAGAAGCTAGTCAAATTCATGTGTGAATGCAAGGAGTTGGGGAATTTTTCCTCAGTTTCCTAGTTGTAGTTTTCAAATTTCTTATGCTTCTATCATAAAGTCACAGGCAGAGTATGTACATGGTGTGACCGAATCTGCAGCATGGCTATGATTTATGTCAGAGGCTATGTATTCAACACCAGCAATGCATAAAAGCATACATTCGTTTACTTGAAAAACATT

Fln Alignment:

Contig10328___MAMLRWVFLALILFSVVNLCKSEAEEQ------GSEAVLTLDANSFSEALSSHPFIVVEFYAPWCGHCKRLAPEYEKAAAILKNHDPPIVLAKVDANEETNKALASEYDVKGFPTLKIIRKGGSSVQDYKGPRDADGIVEYLKKQAGPASVEIKSSEEATSLIGDKKVFIVGVFSNFEGEEYTNFTTVTETMRSEYDFGHTSDATFLPLKNSPINPPFVRLFKPFDEQYSDSQDFNVDSLEKFVEEASIPLVAVLTKDPESHSHVIKFFNSPDAK
A9NSV6__________________MAMLRWVTLALILFSVVSLCKSEAEAEAETEAEGGEAVLTLDANNFAEALSSHPFIVVEFYAPWCGHCKRLAPEYEKAAASLKNHDPPIVLAKVDANEETNKALASEYDVKGFPTLKIIRKGGASVQDYKGPREADGIVKYLKKQAGPASVEIKSSEEATSLIGDKKVFIVGVFSTFEGEEYTNFTTVTETLRSDYDFGHTSDATIIPLKDSPINPPFIRLFKPFDELYSDSQDFNVDSLEKFVEEASTPLIAVLTKDPDSHAHVIKFFNSPDAK

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
34	16		66	16	0.988813
35	16		16	66	0.988813
38			83	16	0.994512
444			90	9	0.999842
633		5	89	2	0.979359
668	6			93	0.999364
728	90			9	1.0
819		91		8	0.999766
823	91	8			0.999766
827	12			87	1.0
828	8	91			0.999766
831			8	91	0.999766
832		90	9		0.999842
840	90	9			0.999872
842		90	10		0.999898
844	88	11			0.999937
941		20		80	0.995493
942	20	80			0.995493
944		80		20	0.995493
950		25	75		0.996473
953	66			33	0.997452
954	66			33	0.997452
1915	20	80			0.995493
1973		85		14	0.993533
2089	20		80		0.995493
2090		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain