SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10287

Length: 857 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10287 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5103	1/19
SustainPine v2.0	sp_v2.0_unigene22237	16/19
SustainPine v2.0	sp_v2.0_unigene61490	2/19

Source	Descriptions	Term	Type	Identity
AutoFact	Double Clp-N motif protein [Arabidopsis thaliana] gb\|AAK59640.1\| unknown protein [Arabidopsis thaliana] gb\|AAL15176.1\| unknown protein [Arabidopsis thaliana] gb\|AAM63872.1\| unknown [Arabidopsis thaliana] gb\|ACG24236.1\| ATP-dependent Clp protease ATP-bindi	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	atp-dependent clp protease atp-binding subunit clpa	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	76%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	76%
Blast2go	thylakoid	GO:0009579	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Clp, N-terminal	IPR004176	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
410			16	83	0.994512
415		83		16	0.994512
528	12		87		0.992554
529	87	12			0.992554
531		87		12	0.992554
574	83			16	0.994512
614	16			83	0.994512
616	16			83	0.994512
617			83	16	0.994512
690			80	20	0.995493
691	80			20	0.995493
726	25		75		0.996473
727			75	25	0.996473
728			75	25	0.996473
749	33			66	0.997452
750		33	66		0.997452
752	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain