SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10272

Length: 1753 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10272

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7957	1/29
SustainPine v2.0	sp_v2.0_unigene28676	28/29

Source	Descriptions	Term	Type	Identity
AutoFact	Putative translation initiation factor 2B beta subunit n=1 Tax=Nicotiana tabacum RepID=Q9SPU4_TOBAC	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	translation initiation factor eif-2b beta subunit	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Initiation factor 2B-related	IPR000649	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADE2

Fln msg: your sequence is longer than subject: 415 - 371

Fln protein: MPDLQAAVNDFVVKLKRRQVEGSQATARETAVLLRSVISQQRVPHSNQAASLIEAVKSVGVQLIAANPVELSVGNIVRHILHIIREEDVSLATTGVGGLSVSAGSDDEDDTQHDNSSALSAAALAAASRSALRAPSLHNLLESIPSPAAAPLTGSSGGESEGKSKSADKNSRSWKLKHGVIEAINELIEDIDNSHSQIAEQALEHIHQNEVILTLGHSRTVMQFLCEAKKKRSFQVFIAEGAPRYQGHALAKELVAKDLQTTVITDSAVFAMISRVNMVMVGAHAVMANGGVIAPVGHHMVALAAHRHAVPFVVLAASHKLCPLYPHNPEVLLNDLKSPSELLDLGDFSDCIDGVTGGTRLRVVNPAFDYVPPQLVSLFVTDTGGHNPSYMYRLIAEYYTPDDYVLQQHVEPGI*

Protein Length: 416

Fln nts: AATGTAGAGAAAGATTAGCTTTTGTGTTTCGGGGCGTTTTCATTCTAATCTCGGTGTGCACGAGTAGCATAACAGATTGAGATACAGCGCAAAA_-_ATGCCTGACCTACAGGCGGCAGTTAATGATTTTGTTGTCAAGCTCAAGCGACGGCAGGTTGAGGGTTCACAGGCCACTGCTAGAGAAACTGCAGTTCTTCTACGGTCTGTTATCTCTCAACAAAGAGTACCACACTCAAATCAGGCAGCTTCACTTATTGAAGCTGTGAAGTCAGTGGGCGTGCAACTTATAGCTGCCAATCCAGTTGAGCTATCTGTTGGGAACATTGTGAGACATATATTACATATAATTCGCGAGGAGGATGTGTCTTTGGCAACAACGGGTGTTGGAGGTTTAAGTGTCTCTGCTGGCAGTGATGATGAGGATGATACCCAGCATGATAACTCTTCGGCATTATCTGCAGCTGCTCTTGCTGCTGCATCTAGAAGTGCTTTGCGAGCTCCCTCATTACATAATCTTTTAGAATCTATACCTAGCCCAGCAGCTGCTCCTCTCACTGGTTCTTCAGGAGGCGAGTCTGAAGGAAAAAGCAAATCTGCTGACAAAAACTCAAGGAGCTGGAAATTGAAGCATGGAGTAATTGAGGCTATTAATGAACTGATTGAAGATATTGATAACAGTCACTCTCAGATTGCAGAGCAAGCATTGGAACATATTCATCAGAACGAGGTGATATTAACTTTAGGACACTCAAGGACAGTGATGCAATTTCTCTGCGAGGCCAAGAAAAAGAGATCTTTTCAAGTTTTCATTGCAGAGGGTGCTCCTAGATATCAAGGACATGCCCTTGCTAAAGAGCTCGTTGCAAAAGATTTGCAAACAACAGTGATTACTGATTCAGCTGTCTTTGCTATGATATCACGTGTGAACATGGTCATGGTAGGTGCTCATGCTGTCATGGCCAATGGTGGAGTCATAGCACCAGTAGGACATCATATGGTTGCACTTGCAGCTCATCGACATGCAGTTCCATTTGTTGTACTGGCTGCCTCGCACAAGCTCTGCCCTTTGTATCCACACAACCCCGAAGTTTTGTTGAATGATCTTAAATCACCATCAGAGTTGTTGGATCTTGGAGACTTCTCTGATTGTATCGATGGTGTAACTGGAGGTACAAGACTGCGTGTTGTCAATCCAGCATTTGACTATGTTCCTCCACAACTCGTGAGCCTTTTCGTTACTGATACTGGAGGACACAACCCTTCATACATGTACCGATTAATAGCGGAATATTACACTCCTGATGACTATGTGCTCCAGCAACATGTAGAACCTGGGATCTAA___GATAGCCCATGTATCTTATACAGCTTGTTAACAGTTTTATTTCTTGAAATTCTCTGCAAGTCTTCCTTTGTACGTACCTAGTGATTCTTGATTGAATCTTTTCTTCTCGAGTTTGCTGAAATTGCCAGAAGTTGCGCATACATAATGAGACAATGATTGATTTTGCAAATATCATTTGTTCCTGGTAACCTCATGCCAGAATGATTCTACGTAGAATAGCTTTGTCCTTCCAAGTGATGAAAATAAAATGAGAAATCTCTCTCTCTAGAAATATGAAGAAATTTAAGGGCAGAAAGATGAAAAAATGCCTCTTGCTTGCACATGCACAGAGATGTCCTTTCTGGCAAATAATGCCTTCCAATGCCAAATTTATTGTTTACATTGAACTTGAATTTTCAAGGCTACTATTTTATC

Fln Alignment:

Contig10272___MPDLQAAVNDFVVKLKRRQVEGSQATARETAVLLRSVISQQRVPHSNQAASLIEAVKSVGVQLIAANPVELSVGNIVRHILHIIREEDVSLATTGVGGLSVSAGSDDEDDTQHDNXXXXXXXXXXXXXXXXXXXXXXHNLLESIPSPAAAPLTXXXXXXXXXXXXXADKNSRSWKLKHGVIEAINELIEDIDNSHSQIAEQALEHIHQNEVILTLGHSRTVMQFLCEAKKKRSFQVFIAEGAPRYQGHALAKELVAKDLQTTVITDSAVFAMISRVNMVMVGAHAVMANGGVIAPVGHHMVALAAHRHAVPFVVLAASHKLCPLYPHNPEVLLNDLKSPSELLDLGDFSDCIDGVTGGTRLRVVNPAFDYVPPQLVSLFVTDTGGHNPSYMYRLIAEYYTPDDYVLQQHVEPGI
D5ADE2__________________MPDLQAAVNDFVVRLKRRQVEGSQATARETAVLLRSVISQQRVPHSNQAASLIEAVTSVGVQLIAANPVELSVGNIVRHILHIIREEDVSLATTGVGGLSVSVGSDDEDDTQHDNSSALSAAALAAASRSALRAPSLHNLLESIPSPAVAPLAFSLGGESEGKSK-SDKNSRSWQLKHGVIEAINELIEDIDNCHSQIAEQALEHIHQNEVILTLGHSRTVMEFLCEAKKKRSFQVFIAEGAPRYQGHALAKELVAKDLQTTVITDSAVFAMISRVNM------------------------------------------LCPLYPHNPEVLLNDLKSPSELLDFGDFSDCIDGGTGGTRLHVVNPAFDYVPPQLVSLFITDTGGHNPSYMYRLIADYYTPDDYVLQQHVESGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain