SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10263

Length: 568 nt

UniGene Fasta

>biog3_v1.0_unigene10263
AATGTCAACAGCAGTGCTCCTTCGCCGTTTGACTCTACCCTATCTACGGCGTTGTGCTTTGTTATATAAGTTGCTGAATTTTTCATCTGCCCATTTGCTAGAGGCTGCTTCTTGGGAGAGTTCAACAGTACACATGGCTCATGATTATGGGCAAAATGGAGATGAGATTTTAGTAGAACTAGAAGAGCTTCAACAACTGGAAAAGCTCTTTCAGATTCCATCTTTAGAAACAATTCTTGAAGATAGAAACGTCCATGGTCTTGTCTTGAGATGGTGTCAACACCTTTCCAAGGAAACAGGATCACGGTCATACAGGCATGTAGTGCGATGTCTCCCTGCTCGTCGGTTTGAACTAATGCGTTTACCACATATTTACCAAGATCTTCTGCAGTGCTATATTAAAGAATGTTGTCCTCAATGCAAATCGGTACCAGAGCAACCAGCTCTGTGCTTGCTTTGTGGTACACTTTGTTGTGCTCCAAGTCGGCGTTTATGCTGCAGTCGAAATGAATGTTACCGACATGCGATGACTTGCGGTGCTGGTGTTGGAGTTTTCTTGATGATAAGA

Ace file of the UniGene biog3_v1.0_unigene10263

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16452	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	43%
Blast2go	protein	-	-	58%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3		IPR003455	-	-
Sma3	S-adenosyl-L-methionine-dependent methyltransferase, putative	IPR011610	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B4FCC9

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 189 - 282

Fln protein: MSTAVLLRRLTLPYLRRCALLYKLLNFSSAHLLEAASWESSTVHMAHDYGQNGDEILVELEELQQLEKLFQIPSLETILEDRNVHGLVLRWCQHLSKETGSRSYRHVVRCLPARRFELMRLPHIYQDLLQCYIKECCPQCKSVPEQPALCLLCGTLCCAPSRRLCCSRNECYRHAMTCGAGVGVFLMIR

Protein Length: 190

Fln nts: AATGTCAACAGCAGTGCTCCTTCGCCGTTTGACTCTACCCTATCTACGGCGTTGTGCTTTGTTATATAAGTTGCTGAATTTTTCATCTGCCCATTTGCTAGAGGCTGCTTCTTGGGAGAGTTCAACAGTACACATGGCTCATGATTATGGGCAAAATGGAGATGAGATTTTAGTAGAACTAGAAGAGCTTCAACAACTGGAAAAGCTCTTTCAGATTCCATCTTTAGAAACAATTCTTGAAGATAGAAACGTCCATGGTCTTGTCTTGAGATGGTGTCAACACCTTTCCAAGGAAACAGGATCACGGTCATACAGGCATGTAGTGCGATGTCTCCCTGCTCGTCGGTTTGAACTAATGCGTTTACCACATATTTACCAAGATCTTCTGCAGTGCTATATTAAAGAATGTTGTCCTCAATGCAAATCGGTACCAGAGCAACCAGCTCTGTGCTTGCTTTGTGGTACACTTTGTTGTGCTCCAAGTCGGCGTTTATGCTGCAGTCGAAATGAATGTTACCGACATGCGATGACTTGCGGTGCTGGTGTTGGAGTTTTCTTGATGATAAGA

Fln Alignment:

Contig10263___CALLYKLLNFSSAHLLEAAS--WESSTVHMAHDYGQNGDXXXXXXXXXXXXXXXXXIPSLETILEDRNVHGLVLRWCQHLSKETGSRSYRHVVRCLPARRFELMRLPHIYQDLLQCYIKECCPQCKSVPEQPAXXXXXXXXXXAPSRRLCCSRNECYRHAMTCGAGVGVFLMIR
B4FCC9__________________CALLWELLRSSATSPLYDGSNIWEGSHLYLSNSTQDDSSSLAMELAGLRELEDLFQIQSLDLILQDESVHMLALKWSQHFCEEYNPRKYRGTLFSTPAVPFRLMQLPDVYQVLLERYIKMQCPDCGSVPDEPA-LCLLCGKLCSPSWKPCCRTGKCQNHALQCGAGIGIFLLVR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
385	16			83	0.994512
386	16	83			0.994512
388			16	83	0.994512
389		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain