SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10262

Length: 1542 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10262

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4639	31/32

Source	Descriptions	Term	Type	Identity
AutoFact	CT842949 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cDNA clone CONTIG9501, mRNA sequence.	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	73%
Blast2go	low psii accumulation 3 protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	photosystem II assembly	GO:0010207	Biological Process	82%
Blast2go	proplastid stroma	GO:0009571	Cellular Component	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site	IPR018294	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HBR1

Fln msg:

Fln protein: MAPMFTSFVAPTTKPYIPMVTMLKPFLSTYAIVAKMTTLLPSPAIHSVVCGHLNRGLIRNVSKAQVRGRLQETSEVDPRAGIPLYKPKTYEVLVDDAAKALIYALDDGKTRLEIEFPPLPSSISSYKGSSDEFIDANIQLVLALVRKLHEARGMTSRIVFPDNPEKRRASRVFRTALELINGVNFGSLDDIQSGAVKSFFSFIRNTLDFDFEENGEGKWESTEEPSLFIFVNCSTRELSEVEKYVETFATSTPALLFNLELETLRSDLGLFGFPSKDVQYRFLSQFLPIYYIRTRDYSKTVAVAPFLLDYSGALFRQYPGPWQVMLKQADGSYACVAESVKRFTLGQTKEELLRALGLQEEEGSSMEFLRRGYKTSTWWEEDIDLEESSAWRS*

Protein Length: 395

Fln nts: AATGTAGAA_-_ATGGCTCCTATGTTCACTAGTTTTGTTGCTCCAACCACCAAGCCATACATACCCATGGTGACGATGTTGAAGCCTTTTCTATCAACTTATGCGATTGTTGCCAAAATGACTACTCTGCTTCCATCTCCAGCCATTCATTCGGTCGTCTGTGGTCATTTAAACAGAGGGTTGATAAGGAACGTGTCTAAAGCTCAAGTTCGAGGCAGACTACAAGAAACGTCAGAGGTTGACCCAAGAGCTGGAATTCCATTATACAAACCCAAAACTTATGAAGTTCTAGTTGACGACGCAGCAAAGGCTCTCATCTATGCACTTGACGATGGCAAAACTCGTCTTGAAATTGAATTTCCTCCTCTACCAAGCAGTATTTCTTCATATAAGGGATCCTCAGATGAGTTCATTGACGCTAATATCCAGCTTGTTTTAGCATTGGTTCGCAAGTTGCATGAGGCAAGGGGAATGACATCTCGTATAGTTTTTCCTGATAATCCAGAAAAACGAAGGGCTTCTCGAGTGTTCCGTACAGCCCTTGAACTTATAAATGGCGTTAATTTTGGAAGCCTGGACGACATTCAAAGTGGAGCGGTTAAAAGTTTCTTTAGTTTCATAAGGAACACATTAGACTTTGATTTTGAGGAAAATGGTGAAGGTAAATGGGAGTCAACAGAGGAGCCATCATTATTTATTTTTGTAAATTGTAGCACTCGTGAGTTGTCCGAAGTTGAAAAATATGTGGAAACATTCGCAACATCAACTCCAGCTCTTCTTTTCAACTTGGAGCTTGAGACATTGCGGTCTGACTTGGGTCTTTTCGGATTTCCTTCAAAGGACGTTCAATATCGATTTCTTTCTCAGTTTCTACCCATTTACTACATTCGAACTCGAGACTACTCAAAGACAGTGGCAGTTGCCCCATTTCTGTTGGACTATAGCGGAGCTCTTTTTCGCCAATATCCTGGGCCTTGGCAGGTAATGCTAAAACAAGCTGATGGTTCTTATGCATGTGTTGCTGAAAGTGTCAAACGATTTACCTTGGGCCAAACTAAAGAAGAGCTTTTACGAGCTCTTGGCCTCCAAGAAGAAGAAGGAAGTTCTATGGAATTTTTAAGAAGAGGATATAAGACATCTACTTGGTGGGAAGAGGACATTGATTTGGAGGAGTCCTCAGCTTGGAGGAGCTAA___ATTAGGCAGATTCTTCTCATGTCAGCTAGGGTCTTCACATAGATGTACCATATGGAAACTTCTGTATAAGTTTTATGTATGTTGTTTTTATTATCTCCTTTCCTTTCTTTACATCCTAGATATGCAGTACAACTTATTATGTACACATTTGGTAGACAGGGTGTAGCTCTGTGTTCTTTTTGCAATCCAAACTACTTGTAAACATTTGTGTTTCCTCCTGTGTTTTTACTGCATTGTGTTGAAGTCTACATTGTTAGTCTGTTGTCTTTACATAGATTAGATGATTCATAACATGATTTGTGATGTTTATAATTTTTAAATAAGACTCAAATGGTTATTTTGCAGAACATT

Fln Alignment:

Contig10262___RLQETSEVDPRAGIPLYKPKTYEVLVDDAAKALIYALDDGKTRLEIEFPPLPSSISSYKGSSDEFIDANIQLVLALVRKLHEARGMTSRIVFPDNPEKRRASRVFRTALELINGVNFGSLDDIQSGAVKSFFSFIRNTLDFDFEENGEGKWESTEEPSLFIFVNCSTRELSEVEKYVETFATSTPALLFNLELETLRSDLGLFGFPSKDVQYRFLSQFLPIYYIRTRDYSKTVAVAPFLLDYSGALFRQYPGPWQVMLKQADGSYACVAESVKRFTLGQTKEELLRALGLQEEEGSSMEFLRRGYKTSTWWEEDIDLEESSAWRS
F6HBR1__________________RCSKKADFDPKVGVSVYKPKSYEVLVTDAANSLAYALDDGKTRLEIDFPPLPSNMSSYKGSSDEFIDANIQLVLAVVRKLQERKETKACIVFPDKPEKRRASQIFKTALDSIDGISIGSLDDVPSGPVATFFRSIRDTLDFDFEDDNEGRWESKEAPSLYIFINCSTRELAAIEKFVEKFAPSTPTLLFNLELDTLRADLGLLGFPTKDLHYRFLSQFVPVFYIRIREYSKTVAVAPYIVNYSGALFRQYPGPWQVMLKQADGSYACVAESATRFTLGETKEELLRVLGLQEEEGSSLEFLRRGYKSSTWWEEDVELESSSAWRS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1217	25			75	0.996473
1220			75	25	0.996473
1221		75		25	0.996473
1285	25			75	0.996473
1286		25		75	0.996473
1313		80		20	0.995493
1358	25		75		0.996473
1359		25	75		0.996473
1360	25			75	0.996473
1361			75	25	0.996473
1502		20		80	0.995493
1503	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1085	1096	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain