SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10226

Length: 860 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10226

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16752	1/23
SustainPine v2.0	sp_v2.0_unigene25325	16/23
SustainPine v2.0	sp_v2.0_unigene25868	4/23
SustainPine v2.0	sp_v2.0_unigene33833	2/23

Source	Descriptions	Term	Type	e value	Identity
AutoFact	YABBY2-like transcription factor YAB2 [Antirrhinum majus]	-	-	2.8026e-45	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	axial regulator yabby 5	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3		IPR000910	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	YABBY protein	IPR006780	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
224	16		16	66	0.988813
225	16		66	16	0.988813
227		16	16	66	0.988813
229	20	40			1.0
231	83			16	0.994512
330	40		60		1.0
360	14	85			0.993533
361	14		28	57	1.0
363		85	14		0.993533
364			85	14	0.993533
406	71		28		1.0
413	85			14	0.993533
414	85			14	0.993533
449	66	33			1.0
484	33		66		1.0
606	80	20			0.995493
608		80		20	0.995493
609	40	20			1.0
610	40	20		20	0.994159
612			75	25	0.996473
692		25		75	0.996473
693	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain