SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10203

Length: 1036 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10203

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12237	4/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ELM2; AT-rich interaction region; Homeodomain-related n=1 Tax=Medicago truncatula RepID=Q2HUC6_MEDTR	-	-	4.0e-27	48%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	39%
Blast2go	dna binding	-	-	7.26063e-27	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	7.26063e-27	66%

Source	InterPros	Term	Type	Identity
Sma3	ELM2 domain	IPR000949	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	ARID/BRIGHT DNA-binding domain	IPR001606	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR014778	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9I8L8

Fln msg: Separated hits, possible frame ERROR between 506 and 518, STOP codon was not found. Distance to subject end: 54 aas, your sequence is shorter than subject: 345 - 425

Fln protein: CINEMPVPVNDFHQLAHCPSSCVASSLLGVHTRCGMASSIPIDRHQMEQHSQKLPTILNVTAGYGFSSFEHVSRKKVSIGPEFQAEVPVWNGLPKQSQIQAMNEDYSFNENMDGSRWLPNPVWPMKDREVVNEERIGKGRSDRCSCSVQGSIECVRLHVEEERENLRxxxxxAFSSWRFDDMGESVSKSWSSEEERKFWALVRLNPASLEKNFWNYLPTCLPSRKIEDLVSYYFNVFVLRRRGIQNRVTPDNIDSDDDESEVGSVDNANVQVVKASGTKGKMCMPRINYSGNESSSRACCINTQNCGLKRYRKGGESTLSLPHLEEHNYVDVDKQLGVASLSYNM

Protein Length: 346

Fln nts: AATGTATTAACGAAATGCCTGTGCCGGTAAATGACTTCCATCAACTAGCACATTGTCCCTCTTCTTGTGTAGCTTCATCTCTGCTTGGTGTTCATACACGGTGCGGCATGGCTTCTTCAATCCCTATTGACCGTCATCAGATGGAACAACATTCTCAAAAATTGCCTACTATTCTCAATGTCACAGCAGGTTATGGATTTAGCAGTTTCGAGCACGTCTCGAGGAAAAAGGTTTCAATAGGACCAGAATTCCAGGCTGAGGTACCTGTTTGGAATGGTCTGCCAAAGCAGTCACAGATTCAAGCCATGAATGAAGATTACAGTTTCAATGAGAACATGGATGGTTCTAGGTGGTTACCTAACCCAGTTTGGCCCATGAAAGACCGTGAAGTAGTCAATGAGGAGAGAATTGGGAAGGGGAGATCTGATAGGTGCTCTTGTTCCGTACAAGGTTCTATAGAATGTGTTAGGTTGCATGTGGAAGAGGAGAGGGAAAACTTGAGGAAxxxxxxxxxxxxTGCTTTCTCATCATGGAGATTTGATGATATGGGAGAAAGTGTCTCAAAATCATGGAGCTCGGAAGAGGAGCGCAAGTTTTGGGCTTTGGTGAGATTAAATCCCGCCTCGCTTGAAAAGAATTTCTGGAACTATCTACCAACCTGCTTACCTTCAAGAAAGATTGAGGATTTGGTTAGCTATTATTTTAATGTTTTTGTTTTGAGACGAAGAGGCATTCAAAACAGAGTTACACCTGATAATATTGA___CAGTGACGATGACGAATCGGAGGTGGGTTCTGTTGACAATGCAAATGTACAGGTAGTGAAAGCATCAGGAACTAAAGGCAAGATGTGCATGCCCAGGATTAATTATTCAGGAAATGAATCTAGCAGTCGGGCTTGCTGCATAAACACACAGAATTGTGGTTTGAAAAGATATCGGAAAGGTGGGGAATCGACATTGAGCCTACCTCATTTGGAAGAGCACAACTATGTTGATGTTGACAAACAGCTTGGAGTGGCATCCTTGAGCTACAATATG

Fln Alignment:

Contig10203___KKVSIGPEFQAEVPVWNGLPKQSQIQAMNEDYSFNENMDGSRWLPNPVWPMK---DREVVNEERIGKGRSDRCSCSVQGSIECVRLHVEEERENLRKxxxxAFSSWRFDDMGXXXXXXXXXXXXRKFWALVRLNPASLEKNFWNYLPTCLPSRKIEDLVSYYFNVFVLRRRGIQNRVTPDNI
B9I8L8__________________KRIPVGPVFQAEVPEWTGMASESD----------------SKWLGTRVWPLETSINKFVIEREPIGKGRSDSCGCQVPKSIKCVRFHITERRSRVMRxxxxAFNQWRFDKMGEEVKLSWSLEDQKKFGAIVRSNPLSLDKCFWDEIFRCFPSRRREDLVSYYYNVFLLQRRANQNRSTPDSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain