SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10183

Length: 1554 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10183

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26901	36/36

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to mitochondrial substrate carrier family protein isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001983DD0	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	solute carrier family 25 member 44-like	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACT4

Fln msg:

Fln protein: MSLRTSQRPAEDIRLPADIDWQMLDKSKFFILGAALFSGVSATLYPVVVLKTRQQVSQKHMSCISVGSNILRHEGFSGMYRGFGTSLMGTIPARALYMSALEITKSYVGTTAVQVGFSEPAAAAVANAAAGLSAAMAAQLVWTPVDVISQRLMVQGGQGMSQISTNYRGGIDAFRTIMKTDGLQGLYRGFGMSILTYAPSNALWWASYCMTQRMVWTGLGYCRSWEEQSKESLAPGSKTVVAVQGLSAAMAGGVSAIVTTPLDTIKTRLQVLEGNGNCQPTIGQTVRTLLKEGGWMACYRGLGPRWATMSMSATTMITTYEFLKRLSTKPQEDLSSKSH*

Protein Length: 341

Fln nts: AATGTGTGGCACCTTTATCTAGTTATTCATTGTGACTCCTTGTTGGTGGGAACTTTGGCTTTTCTGTGTTGGGCTTCAAATTTTAGTGTAGATACCCTGTACCATAACAAATAGCTCTACTAAAAAACTAGCGAGACAATTCTGTTGGATTGCCCCTGTGGCAAAG_-_ATGAGCCTCAGAACTTCTCAACGGCCAGCAGAGGACATCCGTCTGCCGGCAGACATAGATTGGCAAATGCTTGACAAGTCCAAGTTCTTTATCCTTGGAGCAGCTCTCTTTTCAGGAGTATCGGCAACTTTGTATCCAGTTGTTGTGCTTAAAACTAGGCAACAGGTTTCACAGAAGCATATGTCTTGTATAAGTGTTGGTTCAAACATCTTACGGCATGAAGGTTTTTCAGGCATGTATAGAGGCTTTGGAACATCGTTAATGGGGACAATACCAGCTCGTGCACTGTACATGAGCGCACTTGAAATCACCAAGAGCTATGTCGGCACCACAGCTGTTCAGGTGGGATTCTCAGAACCTGCAGCAGCAGCTGTTGCAAATGCTGCTGCTGGTCTGAGTGCAGCCATGGCTGCACAACTTGTTTGGACACCTGTTGATGTAATTAGCCAGAGGCTGATGGTTCAAGGGGGGCAAGGAATGTCTCAGATATCCACAAATTACCGGGGGGGCATTGATGCATTTCGGACCATAATGAAAACTGACGGATTGCAGGGCCTGTACCGGGGGTTTGGCATGTCTATTCTTACTTATGCTCCTTCAAATGCTCTCTGGTGGGCCTCCTACTGCATGACACAGCGAATGGTGTGGACAGGCCTTGGTTATTGCAGGAGTTGGGAGGAACAGAGCAAAGAATCCTTGGCGCCCGGTTCCAAAACAGTTGTCGCTGTTCAAGGATTGAGTGCTGCAATGGCAGGGGGAGTGTCTGCCATTGTTACCACTCCGCTGGATACCATCAAAACTCGGTTACAAGTACTCGAAGGTAACGGAAATTGTCAACCCACTATAGGCCAAACTGTCAGAACCCTCTTGAAAGAGGGTGGATGGATGGCTTGTTACAGAGGCTTGGGGCCTAGATGGGCTACCATGTCAATGTCTGCCACCACCATGATTACAACCTATGAGTTCCTTAAGCGTTTGTCTACGAAGCCACAAGAAGATTTGAGTAGTAAATCACATTAG___AGAATGTATGTTGATGGGAAATCCATCTTAAGATCTCAGCAAGAAGAATAGAATGCAGGCAAATGAGAAAGAAAATTGATCACATGTTCCAGAATTCCAGTTAAAAAGAGAACCTGATTTTGCTGAAATCAGCTGGCTACACGAGACTCATTGTTAAACTACTGTTCTTAGTCACGTAGGTTTAAATGTTATGCTGATATATAAACGAAGGTTGTATACATTAAGAAGGTCTGGATGCCAACCAGGCCTATAGAGACTTGGTTTCGGAGGACACGGAACAAAGTGGTTAAACTACTATAGATAGAAAGCATAAAGTCTGCATTTTATGTCTCTTTCCAAATATTTTAAAGCAAGCCTCGATTTTGGAC

Fln Alignment:

Contig10183___EDIRLP---ADIDWQMLDKSKFFILGAALFSGVSATLYPVVVLKTRQQVSQKHM---SCISVGSNILRHEGFSGMYRGFGTSLMGTIPARALYMSALEITKSYVGTTAVQVGFSEPXXXXXXXXXXXXXXXXXXQLVWTPVDVISQRLMVQGGQGMSQISTNYRGGIDAFRTIMKTDGLQGLYRGFGMSILTYAPSNALWWASYCMTQRMVWTGLGYCRSWEEQSKESLAPGSKTVVAVQGLSAAMAGGVSAIVTTPLDTIKTRLQVLEGNGNCQPTIGQTVRTLLKEGGWMACYRGLGPRWXXXXXXXXXXXXXYEFLKRLSTKPQ
D5ACT4__________________EEGRVPLPAAEINWDRLDKAKFYAIGAGLFTGVTVALYPISVVKTRLQVIQRNAENPTAISIFRNILKADGISGLYRGFGTVVIGAVPGRVIFLTTLETTKIGALRITEKLNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVSQRLMVQG----TACTAKYSGGLDAARKILMTDGVRGLYRGFGMSVMTYSPSSAFWWASYGFSQRIIWRSLGY-----STENSSLTPSQGEIILVQAGGGIFAGAIASCTTTPLDTIKTRLQVMDIES--APSIKQTIERLINEDGWKGLYRGIGPRFISMSAWGTSMILAYEYLKRLCAKPE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
158	20		80		0.995493
159	20			80	0.995493
160			80	20	0.995493
162		80		20	0.995493
254			16	83	0.994512
413	14			85	0.993533
525	11	88			0.923564
527			88	11	0.923564
597		85		14	0.993533
640	85			14	0.993533
641			85	14	0.993533
650	16	83			0.994512
652		16	83		0.994512
806	50			50	1.0
831	33		66		1.0
834			66	33	1.0
835			66	33	1.0
855	85			14	0.993533
856	85			14	0.993533
981	14			85	0.993533
985	85			14	0.993533
986			85	14	0.993533
1026		20	80		0.995493
1028	80			20	0.995493
1029		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain