SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10180

Length: 936 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10180

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1993	3/7
SustainPine v2.0	sp_v2.0_unigene11248	4/7

Source	Descriptions	Term	Type	Identity
AutoFact	Kinesin light chain, putative n=1 Tax=Ricinus communis RepID=B9RB32_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide TPR-4	IPR011717	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE5

Fln msg: your sequence is shorter than subject: 252 - 824

Fln protein: MYPSVAAVYVRLADVYSKTV*LREARAFCESALRIYEKPSSGSPLPDIVSGLTDIAVIYEGMNEPEHALGLLHKALEALHDAPGQQNVVAGIEAQMGVVYSVLGKHAEARDLLRNAIAKLRASGEMRSVFFGIVLNQMGLACVQCYAINEAADLFEESRLILEEICGPYHPDTLAVCSNLAATYDAMGRLDDAIGVLEHVVGIRERKLDTENADVDVEKQRLTELLKDAGKAKSWKAKSLQSVPSSQNKKK*

Protein Length: 253

Fln nts: AATGTATCCTAGTGTTGCTGCAGTTTATGTTCGCCTTGCAGATGTATACAGTAAGACTGTGTAATTGAGGGAGGCTAGAGCATTTTGTGAGAGTGCGCTAAGGATTTATGAGAAGCCCAGCTCGGGAAGCCCCCTACCTGATATTGTAAGCGGGTTGACTGATATAGCTGTGATCTATGAGGGCATGAACGAGCCTGAACATGCTTTGGGTCTTCTTCATAAGGCGTTGGAAGCCTTGCATGATGCTCCTGGTCAACAGAATGTGGTAGCAGGCATTGAAGCACAGATGGGTGTTGTATACTCTGTCTTGGGGAAACATGCTGAGGCACGAGATTTGTTAAGGAATGCCATTGCAAAATTGAGGGCCAGTGGGGAGATGAGATCTGTCTTCTTTGGCATTGTTTTGAACCAAATGGGACTGGCTTGTGTGCAGTGCTATGCTATAAATGAGGCTGCAGATTTGTTTGAAGAATCAAGGTTGATTTTGGAAGAGATCTGCGGTCCCTATCATCCTGATACGCTTGCTGTCTGTAGCAATCTGGCTGCAACATATGATGCAATGGGCAGGTTGGATGATGCAATTGGTGTATTGGAGCATGTGGTAGGAATTAGAGAAAGGAAACTTGACACAGAAAACGCAGATGTGGATGTTGAGAAACAGAGGTTGACAGAGCTATTGAAAGACGCTGGGAAGGCTAAAAGTTGGAAGGCAAAATCCCTTCAAAGCGTACCAAGTTCCCAGAATAAGAAAAAGTAA___GACACCAGAGGATACAACATATGATGATAACCCATAAGATCATCTACTGTATGGAAATTGATTAAATCAGAAGATATCTCTGCATTGTTCATTTGTGACAGATTGTTGTAGGACCTTGAAGAGTCTAATAAAGGACTGATCTAACTGGACACTGCTGGTTTTCAAGGTTCCTAGACATT

Fln Alignment:

Contig10180___YPSVAAVYVRLADVYSKTV*LREARAFCESALRIYEKPSSGSPLPDIVSGLTDIAVIYEGMNEPEHALGLLHKALEALHDAPGQQNVVAGIEAQMGVVYSVLGKHAEARDLLRNAIAKLRASGEMRSVFFGIVLNQMGLACVQCYAINEAADLFEESRLILEEICGPYHPDTLAVCSNLAATYDAMGRLDDAIGVLEHVVGIRERKLDTENADVDVEKQRLTELLKDAGKAKSWKAKSLQSVPSSQNKKK
B8LKE5__________________HPSAAAVFVRLADLYYKTGKLRESKTYCENALRIYNKPSAGHPPEDIAGGLTELSAIYEAMSEPEQALRLLQKALKILDDAPGQQSAIAGIEAQMGVIYYILGKYGESYSSFKSAVAKLRASGERKSSFFGVVLNQMGLACVQRYAINEAADLFEEARSILEEVSGQYHPDTLAVYSNLAGTYDAMGRLEDAIGVLEYVVGMREEKLGTANPDVDDEKKRLAELLKEAGRARNRKAKSLETLLQSNSIKK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
225			80	20	0.995493
227		80		20	0.995493
283			83	16	0.994512
284		83	16		0.994512
285	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain