SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10176

Length: 314 nt

UniGene Fasta

>biog3_v1.0_unigene10176
AATGTATGTGTTTCGGTGGATTTCAGACTGGCTCCGGAGCATCGCCTCCCTGCAGCCTGCGACGATTCATTCGGGGCTCTTCTGTGGCTCCGTTCGGTTGCCCGAGGAGAGATCGAGGAGCCGTGGCTCAGTCGGTACGCGGATTTCGGGCGATGCGTTCTGATGGGCGACGGCACTGGGGGAAACCTTGTTCACGACGTGGCTCGCCGCGCTCTCGCAACTCCGGACGCCGATTTACTGCGTCCAGTTCGCGTGCGAGGATGTGTTTCTATACATCCTGGCTACGTGAGATCCGAGAGAAGCAAATCGGAGAT

Ace file of the UniGene biog3_v1.0_unigene10176

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6934	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG0657 Esterase/lipase	-	-	4.0e-11	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	cxe carboxylesterase	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	68%
Blast2go	Bisphenol degradation	00363	68%
Blast2go	Glycerophospholipid metabolism	00564	68%
Blast2go	Toluene degradation	00623	68%
Blast2go	Aminobenzoate degradation	00627	68%
Blast2go	Retinol metabolism	00830	68%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	68%
Blast2go	carboxylic ester hydrolase activity	GO:0052689	Biological Process	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW31

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 104 - 292

Fln protein: NVCVSVDFRLAPEHRLPAACDDSFGALLWLRSVARGEIEEPWLSRYADFGRCVLMGDGTGGNLVHDVARRALATPDADLLRPVRVRGCVSIHPGYVRSERSKSE

Protein Length: 105

Fln nts: AATGTATGTGTTTCGGTGGATTTCAGACTGGCTCCGGAGCATCGCCTCCCTGCAGCCTGCGACGATTCATTCGGGGCTCTTCTGTGGCTCCGTTCGGTTGCCCGAGGAGAGATCGAGGAGCCGTGGCTCAGTCGGTACGCGGATTTCGGGCGATGCGTTCTGATGGGCGACGGCACTGGGGGAAACCTTGTTCACGACGTGGCTCGCCGCGCTCTCGCAACTCCGGACGCCGATTTACTGCGTCCAGTTCGCGTGCGAGGATGTGTTTCTATACATCCTGGCTACGTGAGATCCGAGAGAAGCAAATCGGAGAT

Fln Alignment:

Contig10176___VCVSVDFRLAPEHRLPAACDDSFGALLWLRSVARGEIEEPWLSRYADFGRCVLMGDGTGGNLVHDVARRALATPDADLLRPVRVRGCVSIHPGYVRSERSKSE
A9NW31__________________ICVSVDFRLAPEHRLPAACDDSFGALLWLRSVARGETEEPWLTRYADFNRCILMGDSSGGNLVHEVGLRAQATP-PDLLHPVCVRGGISIHPGYVRSERSQSE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
207		33	66	0.997452
212		66	33	0.997452
219	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain