SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10161

Length: 1586 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10161

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene794	31/34
SustainPine v2.0	sp_v2.0_unigene1827	3/34

Source	Descriptions	Term	Type	Identity
AutoFact	Putative cytochrome P450 [Oryza sativa Japonica Group] gb\|EAY89085.1\| hypothetical protein OsI_10573 [Oryza sativa Indica Group]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	cytochrome p450	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	69%
Blast2go	heme binding	GO:0020037	Molecular Function	69%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	69%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LML7

Fln msg: Distance to subject end: 26 aas, your sequence is longer than subject: 490 - 456

Fln protein: MAVDQFLLAFLLFLFGFLLFFITRNRSNRPYQGPVVYPVIGTLWDFLKNRNRVLEWTADVLSRIPSHTFMVQRPGGVRGIITANPSNVEHILRTNFQNYPKGERFRFFLHDFLGKGIFNTDGELWKMQRKVASYEFNTKSLRNIVVEAVQWEIKNRLMVVLKNACEGREKIDLQDVLMRFAFDNICKVAFGVDPGCLHPCLPRSQFAEAFNDATDISAGRFISIVPFLWKIKRMLDIGSEKRLREAINVVNKFAMDIIRSRRSEISEGHVREDLLSRFMAAALSDSEQFETECDQKDSKKSELFVRDMMVSFMMAGRDTTSSALTWFFWLISSRPHVREAIRREILVVTGSRNSIQPEDEWVVFGFDELKGMQYLHAALCESMRLWPPVPVDSKVAVKDDVLPDGTAVPRGWSVNYSIYSMGRMESIWGEDFMEFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVLHSHSGGRH

Protein Length: 491

Fln nts: AGCCACGCTTTCTTTGTGAGCCGGTTTTGTTTGGCTTCTGTGGTGTCTCTGATGTCGCCCTTGTTTCCACTTACGCATCCGAATTGAAGTTTTCTACACCAGACAAGTTTCGGCC_-_ATGGCAGTCGACCAGTTTCTGCTTGCCTTTCTTCTCTTCTTATTTGGCTTCCTACTCTTTTTCATTACAAGAAATCGAAGCAATCGGCCATACCAAGGTCCTGTAGTATATCCTGTAATTGGTACTCTGTGGGATTTTCTCAAGAACAGGAACAGAGTTCTGGAATGGACAGCGGATGTTCTTTCCAGAATCCCTTCCCACACATTTATGGTGCAGCGCCCGGGAGGTGTACGAGGCATTATCACTGCAAATCCCTCAAACGTGGAGCATATTCTGAGAACCAATTTTCAGAATTACCCCAAGGGAGAACGCTTCAGGTTCTTTCTCCACGATTTCCTGGGCAAGGGGATCTTCAACACTGACGGGGAGCTGTGGAAAATGCAGAGGAAGGTTGCGAGCTACGAATTCAATACCAAGTCGCTCCGGAACATAGTAGTGGAGGCTGTTCAGTGGGAAATCAAGAACAGGCTCATGGTGGTCCTCAAGAACGCATGCGAAGGAAGAGAGAAGATAGACTTGCAGGACGTTCTCATGAGGTTTGCATTCGACAATATCTGCAAGGTTGCGTTCGGCGTCGATCCCGGCTGCCTCCACCCTTGTCTGCCCAGGTCCCAATTTGCAGAGGCTTTTAACGATGCTACTGATATCAGCGCGGGTAGGTTTATTTCCATTGTTCCCTTTCTGTGGAAAATCAAGCGAATGCTTGACATCGGTTCTGAGAAGCGGTTAAGAGAAGCGATAAATGTAGTGAACAAATTTGCCATGGACATTATTCGTTCCAGGAGAAGCGAGATCTCTGAAGGGCATGTCAGGGAAGACCTGCTTTCAAGATTCATGGCGGCAGCTCTGTCTGATTCGGAGCAATTTGAGACAGAATGCGATCAGAAAGATTCTAAGAAATCGGAATTATTCGTCAGAGATATGATGGTTAGTTTTATGATGGCAGGTAGGGATACCACTTCGTCTGCCTTAACTTGGTTTTTCTGGCTGATTTCGTCTCGGCCCCATGTCCGAGAAGCCATTCGCAGAGAAATTTTGGTCGTTACAGGCAGCAGAAATTCCATACAACCCGAAGATGAATGGGTCGTCTTCGGCTTTGATGAACTGAAGGGCATGCAGTATCTCCATGCCGCGCTCTGTGAGTCAATGAGGCTGTGGCCTCCCGTGCCTGTTGATTCAAAGGTTGCTGTGAAAGATGATGTATTGCCAGACGGGACTGCTGTACCCAGAGGATGGTCCGTGAATTACAGTATATATTCAATGGGCAGGATGGAGAGCATTTGGGGTGAGGATTTCATGGAGTTCAGACCCGAGAGATGGCTGAAAGATGGGGAATTTGTGGGGGAAAATCCCTACAAATTTACTGTGTTCCAGGCAGGGCCTCGCATATGTTTGGGAAAAGAGATGGCGTTCATACAGATGAAGTCCATTGTAGCATCTGTCCTTCATAGTCATTCTGGAGGTAGACATT

Fln Alignment:

Contig10161___MVQRPGGVRGIITANPSNVEHILRTNFQNYPKGERFRFFLHDFLGKGIFNTDGELWKMQRKVASYEFNTKSLRNIVVEAVQWEIKNRLMVVLKNACEGREKIDLQDVLMRFAFDNICKVAFGVDPGCLHPCLPRSQFAEAFNDATDISAGRFISIVPFLWKIKRMLDIGSEKRLREAINVVNKFAMDIIRSRRSEISEGHVREDLLSRFMAAALSDSEQFETECDQKD-------SKKSELFVRDMMVSFMMAGRDTTSSALTWFFWLISSRPHVREAIRREILVVTGSRNSI--QPEDEWVVFGFDELKGMQYLHAALCESMRLWPPVPVDSKVAVKDDVLPDGTAVPRGWSVNYSIYSMGRMESIWGEDFMEFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVLHSHS
B8LML7__________________MIQRPGGVRGIITANPSNVEHILRANFQNYPKGERFSFLLHDFLGRGILNTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMAVLKNACERGEVIELQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFNDATGISAGRFFSSVPFLWRIKKMLDIGSEKRLREAISVVDEFVMDIIRSRRSEISEGHLREDLLSRFMAAAISDLDQLETECDKNGSQKMAMVSEKSELFVRDMMVSFMMAGRDTTSTALTWFFWLISSRPHIQEAIRREILLVKGNRNSITVEPEDQWVVFDFDELKGMQYLHAALCESMRLWPPVPVDTKVAATDDVLPDGTVVPRGWFVSYSIYSMGRMESIWGGDFMDFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVIHRFS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
228		66		33	0.997452
1109	20			80	0.995493
1111			20	80	0.995493
1112		80		20	0.995493
1343	14	85			0.993533
1344		85		14	0.993533
1345	85			14	0.993533
1367	11		88		0.923564
1419			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain