SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10157

Length: 1199 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10157 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17783	29/29

Source	Descriptions	Term	Type	Identity
AutoFact	N-carbamoylputrescine amidase [Arabidopsis thaliana] gb\|AAD15597.2\| putative nitrilase [Arabidopsis thaliana] gb\|AAM63266.1\| putative nitrilase [Arabidopsis thaliana] dbj\|BAH19976.1\| AT2G27450 [Arabidopsis thaliana] gb\|AEC07997.1\| N-carbamoylputrescine am	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	n-carbamoylputrescine amidase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	N-carbamoylputrescine amidase.	EC:3.5.1.53	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		0.0	90%
Blast2go	Metabolic pathways	01100		0.0	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	0.0	90%
Blast2go	N-carbamoylputrescine amidase activity	GO:0050126	Molecular Function	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	N-carbamoylputrescine amidase	IPR017755	-	0.0	-
Sma3	Nitrilase/cyanide hydratase	IPR003010	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMW3

Fln msg:

Fln protein: MAAVGGERKVVVSALQFACTDDVKTNVDHAERLVREAHAKGANIILIQELFEGYYFCQAQRQDYFQRAKPRKDHPTILRMQNLARELGVVIPVSFFEEANTAHYNSVVVIDADGKDLGLYRKSHIPDGPGYQEKFYFSPGDTGFQVFETKFAKIGLAICWDQWFPEAARAMVLMGAEILFYPTAIGSEPQDSDLDSSQHWKRVMQGHAGANIVPLVASNRIGKEVIETEHGPSQITFYGNSFIAGPTGEILSAANDKDEAILVYEFDLNEIKMKRKSWGVFRDRRPDLYKVLLTLDGSRI*

Protein Length: 302

Fln nts: AATGTAATTCCTTAAAATCTGGTTCGTCCACCACAGTTCACGAGTTTGTCGTAGCTGTGTCTAGCA_-_ATGGCAGCTGTTGGAGGCGAGCGAAAGGTTGTGGTGTCGGCTCTGCAGTTTGCCTGCACAGATGACGTTAAAACAAATGTCGATCATGCTGAGAGGTTGGTAAGGGAGGCACATGCAAAGGGTGCCAACATCATTCTCATTCAAGAACTGTTTGAGGGATACTATTTCTGTCAGGCCCAAAGACAGGATTATTTCCAGAGAGCTAAGCCTCGCAAAGACCATCCTACAATTTTGAGGATGCAGAATCTTGCAAGGGAGTTGGGTGTTGTAATACCAGTGAGCTTCTTTGAGGAGGCAAACACTGCACATTACAATTCAGTTGTTGTAATTGATGCAGATGGAAAGGATCTTGGCTTGTACCGGAAGTCACATATCCCTGATGGGCCAGGCTATCAAGAAAAATTCTACTTCAGTCCGGGTGACACAGGCTTTCAGGTGTTTGAGACCAAGTTTGCCAAAATTGGTTTAGCTATTTGTTGGGATCAGTGGTTTCCAGAGGCAGCAAGAGCTATGGTTCTTATGGGGGCAGAAATCTTATTTTATCCAACCGCAATAGGCTCTGAACCACAGGATTCCGATCTTGATTCATCTCAGCATTGGAAGCGAGTTATGCAAGGGCATGCAGGAGCTAATATTGTACCATTGGTTGCATCAAACCGAATTGGAAAGGAGGTTATTGAAACTGAGCATGGACCGAGTCAGATAACGTTTTATGGAAACTCCTTCATAGCAGGACCTACTGGAGAAATATTATCAGCTGCTAATGACAAGGATGAAGCAATCTTGGTTTACGAATTCGACTTGAACGAGATCAAGATGAAAAGGAAGAGCTGGGGAGTATTTAGAGATAGGCGACCTGATCTGTATAAGGTGCTTTTGACATTAGATGGCAGTAGGATATGA___CACCATAAGATGTGTTTTTTTTGCTTTGTTGTGAACTCACCAGGGATTTTGAATTGGTGAACTATCAAGTGCCTTAACAGTGCACCCATTCACCATCAATTCAATACTAAAGATATATTATCAGATTGGTATAGTTGAAATTCCTTGGTGACCTCAAGTTTTTCATAAAATATGTCTCTTACATATTTGTATATTTTGACCAGACCATCAAGTATAGATAATGTAACATT

Fln Alignment:

Contig10157___MAAVGGERKVVVSALQFACTDDVKTNVDHAERLVREAHAKGANIILIQELFEGYYFCQAQRQDYFQRAKPRKDHPTILRMQNLARELGVVIPVSFFEEANTAHYNSVVVIDADGKDLGLYRKSHIPDGPGYQEKFYFSPGDTGFQVFETKFAKIGLAICWDQWFPEAARAMVLMGAEILFYPTAIGSEPQDSDLDSSQHWKRVMQGHAGANIVPLVASNRIGKEVIETEHGPSQITFYGNSFIAGPTGEILSAANDKDEAILVYEFDLNEIKMKRKSWGVFRDRRPDLYKVLLTLDGSRI
A9NMW3__________________MAAVEGERMVVVSALQFACTDDVKTNVDHAERLVREAHAKGANIILIQELFEGYYFCQAQREDYFQRAKPRKGHPTILRMQDLARELGVVIPVSFFEEANTAHYNSIVVIDADGKDLGLYRKSHIPDGPGYQEKFYFSPGDTGFQVFETKFAKIGVAICWDQWFPEAARAMVLMGAEILFYPTAIGSEPQDSNLDSSQHWKRVMQGHAGANIVPLVASNRIGKEVIETEHGLSQITFYGNSFIAGPTGEIVSAANDKDEVVLVYKFDLNMIKIKRKSWGVFRDRRPDLYKVLLTLDGSRI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
127	33			66	0.997452
130	66			33	0.997452
771	16	50		16	0.988986
773		16	16	66	0.988813
775		80		20	0.995493
801			20	80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain