SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10149

Length: 428 nt

UniGene Fasta

>biog3_v1.0_unigene10149
AATGTCTTTATTCAGTAAGATTACCAGCGTCTAGAAGGCCAAGATCGGTACGAGTCTGTGGACTTGGACGATGAATACCAAGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGTTGAGCTTGATGCAAGGCATGGTGTTAGTGTGAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAATAGAGTTTAGGCCACGGCGAAGGGCACGGGTTGAGCCTCCAGTTACTGACCAAACTGAAGAGGAGCCTTATGAGGAGGAAGAAGACGAAGAGGGTGAATATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTTCGGCGTTTCATAGCCAAAAAGTTCAGACAGTTTTACTCAGCTATGTGAACCAAAGAAACATT

Ace file of the UniGene biog3_v1.0_unigene10149

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2951	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	minichromosomal maintenance factor [Triticum aestivum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein Sb0019s004400; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	48%
Blast2go	minichromosome maintenance protein 2	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	DNA unwinding involved in replication	GO:0006268	Biological Process	85%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	85%
Blast2go	regulation of cell proliferation	GO:0042127	Biological Process	85%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	85%
Blast2go	embryo development	GO:0009790	Biological Process	85%
Blast2go	DNA binding	GO:0003677	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	Mini-chromosome maintenance, conserved site	IPR018525	-	-
Sma3	Mini-chromosome maintenance complex protein 2	IPR008045	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C6JS28

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 701 aas, your sequence is shorter than subject: 138 - 955

Fln protein: NVFIQ*DYQRLEGQDRYESVDLDDEYQDERGYDEIMADRRAAEVELDARHGVSVNRKLPRILRDQDTDDEIEFRPRRRARVEPPVTDQTEEEPYEEEEDEEGEYEMYNVQGTLREWVTRDEVRRFIAKKFRQFYSAM*

Protein Length: 139

Fln nts: AATGTCTTTATTCAGTAAGATTACCAGCGTCTAGAAGGCCAAGATCGGTACGAGTCTGTGGACTTGGACGATGAATACCAAGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGTTGAGCTTGATGCAAGGCATGGTGTTAGTGTGAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAATAGAGTTTAGGCCACGGCGAAGGGCACGGGTTGAGCCTCCAGTTACTGACCAAACTGAAGAGGAGCCTTATGAGGAGGAAGAAGACGAAGAGGGTGAATATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTTCGGCGTTTCATAGCCAAAAAGTTCAGACAGTTTTACTCAGCTATGTGAACCAAAGAAACATT

Fln Alignment:

Contig10149___DYQRLEGQDRYESVDLDDEYQDERGYDEIMADRRAAEVELDA---RHGVSVNRKLPRILRDQDTDD------------------------------------XXXXXXXXXXXXXXXVTDQTXXXXXXXXXXXXXXXXXXNVQGTLREWVTRDEVRRFIAKKFRQF
C6JS28__________________DYRRMDEHDQYESVGLDDSLEDERNLDEIMADRRAAEVELDARDVRSGTAADRKLPRMLHDQDTDEDMNFRRPKRHRASFRPPSGPRTPRSDDDGDGATPSSPGRSQRGMYSGGDVPMTDQTDDDPYEDEFDEEDEMNMYRVQGTLREWVTRDEVRRFIAKKFKEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain