SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10148

Length: 294 nt

UniGene Fasta

>biog3_v1.0_unigene10148
AATGTGACCCAAATGTAATGTTGTATATGATTATGCTGGTGGCATGGAAGATTTAAAAATGGCTAAGGTACGGACAGTAATTCCTGCTCATGTCTCATTTGCAGAGGACCGTGCACGAATATTGCGTGCAATCAGGATTGCAGCTCGTCTTAACTTTCAATTTTCCAGAGATACGGCTCGTGCAATACAAGATTGTTCTCTTTCAATTCTACGGATCGAAAAGCAAAGGCTGATGATGGAAATGAACTATATGCTGGCATTCGGAGCAGCAGAGGCGTCTCTGCGTTTGCTTTG

Ace file of the UniGene biog3_v1.0_unigene10148

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4435	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] gb\|AEE30912.1\| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana]	-	-	9.99967e-42	55%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	64%
Blast2go	trna nucleotidyltransferase (cca-adding enzyme)	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polynucleotide adenylyltransferase.	EC:2.7.7.19	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	77%
Blast2go	RNA binding	GO:0003723	Molecular Function	77%
Blast2go	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Poly A polymerase, head domain	IPR002646	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TYT2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 233 aas, your sequence is shorter than subject: 97 - 537

Fln protein: M*PKCNVVYDYAGGMEDLKMAKVRTVIPAHVSFAEDRARILRAIRIAARLNFQFSRDTARAIQDCSLSILRIEKQRLMMEMNYMLAFGAAEASLRLL

Protein Length: 98

Fln nts: AATGTGACCCAAATGTAATGTTGTATATGATTATGCTGGTGGCATGGAAGATTTAAAAATGGCTAAGGTACGGACAGTAATTCCTGCTCATGTCTCATTTGCAGAGGACCGTGCACGAATATTGCGTGCAATCAGGATTGCAGCTCGTCTTAACTTTCAATTTTCCAGAGATACGGCTCGTGCAATACAAGATTGTTCTCTTTCAATTCTACGGATCGAAAAGCAAAGGCTGATGATGGAAATGAACTATATGCTGGCATTCGGAGCAGCAGAGGCGTCTCTGCGTTTGCTTTG

Fln Alignment:

Contig10148___PKCNVVYDYAGGMEDLKMAKVRTVIPAHVSFAEDXXXXXXXXXXXXXXNFQFSRDTARAIQDCSLSILRIEKQRLMMEMNYMLAFGAAEASLRLL
D7TYT2__________________PYTKIVYDYMGGMQDIKKAKVRTVIPANISFVEDCARILRGVRIAARLGFRFTKDIAHSVRELSCSVLRLDKGRILMEMNYMLAYGSAEASLRLL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
12	75			25	0.996473
17	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain