SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10138

Length: 1282 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10138

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17642	12/43
SustainPine v2.0	sp_v2.0_unigene22748	29/43

Source	Descriptions	Term	Type	Identity
AutoFact	3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] gb\|AAK44012.1\|AF370197_1 unknown protein [Arabidopsis thaliana] emb\|CAB43926.1\| putative protein [Arabidopsis thaliana] emb\|CAB79670.1\| putative protein [Arabidopsis thaliana] gb\|AAL33784.1\| unknow	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	3-hydroxyisobutyrate dehydrogenase	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyacid dehydrogenase/reductase	IPR015815	-	-
Sma3		IPR006183	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Tyrosinase	IPR002227	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ37

Fln msg: your sequence is longer than subject: 334 - 300

Fln protein: MHYSFSSPFLRRLPSLLLSSNCGRRHFVAAYSSMAAEKPRVGWIGTGVMGQAMCGHILSAGYSVTVFNRTLSKAQTLCDRGAIIADSPKSVAAESDVVFTIVGYPKDVREVIIGENGVLQGLKPGGTVVDMTTSEPSLARDIFDYAKQKGCESVDAPVSGGDKGAKAGTLAIFAGGEETVVERLKPLFDCMGKVTYMGGPGLGQCTKLGNQITIASTMVGLVEGMVYAHKAGLDVEMYIKAISTGAAGSRSLDLYADRILRRDFDPGFFVNHFVKDLGISLRESQQMGLSLPGLALAQQLYVSLKAHGEGNLGTQALVLALERLNNVQLPKIG*

Protein Length: 335

Fln nts: CGGGAGAGCTGCCTTTCGATGCCCTGTGTTACCCATGGGACTGTTGAATTTTCTATCTACCTGAG_-_ATGCATTACTCATTCTCGTCACCATTTCTCCGACGTCTGCCCTCATTATTACTGTCGAGCAACTGCGGAAGAAGACATTTCGTGGCCGCATATTCATCAATGGCGGCCGAGAAACCCCGCGTGGGATGGATCGGAACTGGCGTAATGGGACAAGCGATGTGCGGCCACATTCTCTCGGCTGGTTATTCCGTCACAGTTTTCAACAGAACTCTGTCAAAAGCCCAAACCCTCTGCGACAGAGGGGCGATCATAGCGGACAGTCCCAAATCTGTTGCAGCTGAGAGTGACGTAGTCTTCACAATCGTGGGTTATCCGAAAGATGTCCGAGAAGTAATCATCGGGGAGAATGGAGTTCTGCAGGGTCTAAAACCTGGGGGCACGGTGGTCGATATGACCACAAGCGAACCCTCTCTAGCCCGTGACATATTTGATTATGCAAAGCAAAAGGGATGTGAATCAGTGGACGCCCCGGTCTCTGGTGGCGACAAGGGGGCTAAGGCAGGAACCCTGGCGATCTTTGCAGGTGGGGAAGAAACCGTGGTGGAAAGGCTTAAGCCCCTTTTCGATTGCATGGGCAAGGTCACATACATGGGGGGACCGGGGCTAGGGCAATGCACTAAGTTGGGTAACCAGATAACCATAGCTTCAACCATGGTTGGGCTGGTTGAGGGTATGGTCTATGCCCACAAGGCGGGTTTGGATGTTGAGATGTATATCAAGGCTATTTCCACCGGTGCAGCTGGGTCTAGGTCTCTGGATTTGTATGCAGATAGGATTCTACGGAGGGATTTTGATCCTGGGTTCTTTGTGAATCATTTTGTTAAGGACCTGGGCATCAGCCTCAGAGAATCCCAGCAGATGGGTCTTTCGCTTCCGGGTCTTGCATTGGCTCAGCAACTTTATGTGTCCTTGAAGGCCCATGGTGAAGGTAATCTAGGCACCCAAGCTCTGGTTTTGGCTCTTGAACGCCTCAATAATGTGCAGCTCCCCAAAATCGGTTAG___TTTTTAGGATATTAATTTATCCTTGAACGTTTATTTTTAAGCATTATTCTCAAAAATCCAATTCTCCAATTAGCAAAGTGTTTCGGTGACTCGCATTGCCTCAGAACTCCGCACAGGGAAGTCAGCAATAAGAAGAGAATTACTGTTTTAAGTTTGATAGTTGTTAGCACTCAAGAGCAAAATTACAAGACCAGCTAGTTATGGATTTTACTAGG

Fln Alignment:

Contig10138___MAAEKPRVGWIGTGVMGQAMCGHILSAGYSVTVFNRTLSKAQTLCDRGAIIADSPKSVAAESDVVFTIVGYPKDVREVIIGENGVLQGLKPGGTVVDMTTSEPSLARDIFDYAKQKGCESVDAPVSGGDKGAKAGTLAIFAGGEETVVERLKPLFDCMGKVTYMGGPGLGQCTKLGNQITIASTMVGLVEGMVYAHKAGLDVEMYIKAISTGAAGSRSLDLYADRILRRDFDPGFFVNHFVKDLGISLRESQQMGLSLPGLALAQQLYVSLKAHGEGNLGTQALVLALERLNNVQLPKIG
A9NZ37__________________MAAEKPRVGWIGTGVMGQAMCGHILSAGYSVTVFNRTLSKAQTLCDRGAIMVDSPKSVAAESDIVFTIVGYPQDVREVIIGENGVLQGLKPGGTVVDMTTSEPSLAREIIDYAKQRGCESVDAPVSGGDKGAKAGALAIFAGGEETVVEGLKPLFDCMGKVTYMGGPGLGQCTKLGNQITIASTMVGLVEGMVYAHKAGLDVEMYIKAISAGAAGSRSLDLYADRILRRDFDPGFFVNHFVKDLGISLRECQQMGLSLPGLALAQQLYVSLKAHGEGNLGTQALVLALERLNNVQLPKIG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
80	20			80	0.995493
84		80		20	0.995493
226	33		66		0.997452
227		33		66	0.997452
228	33		66		0.997452
229		66		33	0.997452
230			66	33	0.997452
1149		16	83		0.994512
1150	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain