SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10130

Length: 411 nt

UniGene Fasta

>biog3_v1.0_unigene10130
AATGTAAGCAGTTGGTTATTCAACGCAGAGTACGCGGGGCTTCGTTCGTGTAGTTAACCTTGCTACTGTGTGCTCTGATATATTTTTGTCTGGTGCAGTCCAGCATTAATAAACAACAATATGCCGTCTGTATCAGAGCTCACAAAGGAGGAGGAGGAAACTCTTGCTGCTAAGTTGGAGCAGCAAAAACTAGAGTCTGATGAGCCCATCATAGAAGACGATGAAGATGACGACGATGAAGAAGATGATAATGATGAGGACGATGCTCAAGGAGAGCAAGGTGGTGAGGGAAAGTCAAAGCAAAGTAGGAGTGAGAAAAAGTGTCGGAAGGCTATGCTTTAAAACTAGGGATGAAACCCGTTTCTGGTGTCTCAAGGGTTACTATAAAGAAAAGCAAAAATATTTTACATT

Ace file of the UniGene biog3_v1.0_unigene10130

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17145	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Nascent polypeptide-associated complex subunit alpha-like protein n=2 Tax=Pinaceae RepID=NACA_PINTA	-	-	91%
FL-Next	sp=Nascent polypeptide-associated complex subunit alpha-like protein; Pinus taeda (Loblolly pine).	-	-	100%
Blast2go	nascent polypeptide-associated complex subunit alpha-like	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	92%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Sma3	Nascent polypeptide-associated complex NAC	IPR002715	-	-
Sma3	Nascent polypeptide-associated complex, alpha subunit	IPR016641	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M612

Fln msg: Overlapping hits, possible frame ERROR between 339 and 339, Distance to subject end: 108 aas, your sequence is shorter than subject: 97 - 205

Fln protein: MPSVSELTKEEEETLAAKLEQQKLESDEPIIEDDEDDDDEEDDNDEDDAQGEQGGEGKSKQSRSEKKCRKAMxxKLGMKPVSGVSRVTIKKSKNILH

Protein Length: 98

Fln nts: AATGTAAGCAGTTGGTTATTCAACGCAGAGTACGCGGGGCTTCGTTCGTGTAGTTAACCTTGCTACTGTGTGCTCTGATATATTTTTGTCTGGTGCAGTCCAGCATTAATAAACAACAAT_-_ATGCCGTCTGTATCAGAGCTCACAAAGGAGGAGGAGGAAACTCTTGCTGCTAAGTTGGAGCAGCAAAAACTAGAGTCTGATGAGCCCATCATAGAAGACGATGAAGATGACGACGATGAAGAAGATGATAATGATGAGGACGATGCTCAAGGAGAGCAAGGTGGTGAGGGAAAGTCAAAGCAAAGTAGGAGTGAGAAAAAGTGTCGGAAGGCTATGxxxxxxAAACTAGGGATGAAACCCGTTTCTGGTGTCTCAAGGGTTACTATAAAGAAAAGCAAAAATATTTTACATT

Fln Alignment:

Contig10130___RSEKKCRKAMxKLGMKPVSGVSRVTIKKSKNIL
Q9M612__________________RSEKKCRKAMxKLGMKPVSGVSRVTIKKSKNIL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
190	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
146	158	AGG AGG AGG AGG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain