SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10119

Length: 1051 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10119

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8169	26/26

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein dehydration-INDUCED 19-4 [Arabidopsis thaliana] sp\|Q8VXU6.1\|DI194_ARATH RecName: Full=Protein DEHYDRATION-INDUCED 19 homolog 4; Short=AtDi19-4 gb\|AAL67123.1\| AT3g06760/F3E22_10 [Arabidopsis thaliana] gb\|AAM91471.1\| AT3g06760/F3E22_10 [Arabidopsis	-	-	6.0e-18	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drought induced 19/ RING finger protein 114	IPR008598	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZE0

Fln msg: Overlapping hits, possible frame ERROR between 119 and 92,

Fln protein: MDAESWASRMTAAKRxxxxxxxxxxxLDDLEGDDTRVDFLCPLCFVDFDIASLCCHLEEEHCYETTIAPCPVCAANVGNDIVGHITSQHSHLFKGQRRRKYLRGRIQSNSVPGRERLHSIVGGGSSHFGGYSSNDAPDPLLSSFIYGLPIIESHEQEKQSSSMDDTSTMNSSDSQAVISDNSAVNEEESKRIFEEGVQRAQYVQQLVLSTILPDEF*

Protein Length: 218

Fln nts: AATGTACAGAAGTGTTTATTGCTTGAAATTCCGCCGTAATTATT_-_ATGGATGCCGAGTCATGGGCCTCTCGCATGACTGCTGCTAAGCGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGGATGATTTGGAGGGAGATGATACGCGTGTAGACTTCCTTTGCCCACTTTGCTTTGTGGATTTTGACATAGCATCCCTCTGTTGCCATCTTGAAGAGGAACACTGCTATGAAACTACAATTGCGCCATGCCCTGTATGTGCAGCTAATGTTGGGAATGATATTGTTGGGCATATTACTTCTCAGCACAGCCATCTGTTTAAGGGACAGCGAAGAAGGAAATATCTTAGAGGCAGGATACAATCTAATTCAGTTCCAGGTAGGGAGCGGTTGCATTCTATTGTTGGAGGAGGTTCCTCGCATTTTGGTGGCTATTCCTCTAATGATGCACCAGATCCTCTACTTTCATCGTTCATTTATGGGCTGCCAATTATAGAATCCCATGAACAAGAGAAACAGTCTTCCTCTATGGATGATACTTCAACAATGAACTCTTCAGATTCACAGGCTGTAATCAGTGACAATTCGGCTGTCAATGAAGAAGAATCAAAGCGTATATTCGAAGAAGGGGTGCAACGAGCTCAATATGTGCAACAACTCGTTTTGTCTACCATACTGCCTGATGAATTTTAG___GCTTTTGTAGGGGAGACAGTGGGAATCTTCCTCTTGAGTTTCATGATCACAGCACTAATGAGTGATGCAGGAAAGTCCATTGCACATCAGTGGGCTGCTCTTCAAATTGAGTGTAAGAGCCCGACCAGAATTCATCGTGTGTTGGTTCTGGCGTAATAGGTGTAAAGGACATAGGTTGCTTCTGGTGACATAAAGTCCTTACATTTCAGAGGATTACAAAGTTTACTGCCAATATGTGGTGGTATGGGCGTAGATTCTACCAGATGTAGCTACTGGGTAGATTTAACAATATCCAAGCTTTGCACAATGCAAAGCTTGTTAAAGGAAATGAGATTCAACTATCAAGCATGTTGGTCC

Fln Alignment:

Contig10119___MDAESWASRMTAAKRQxxxxxxxxxCLDDLEGDDTRVDFLCPLCFVDFDIASXXXXXXXXXXYETTIAPCPVCAANVGNDIVGHITSQHSHLFKGQRRRKYLRGRIQSNSVPGRERLHXXXXXXXXXXXXXXXNDAPDPLLSSFIYGLPIIESHEQEKQXXXXXXXXXXXXXXXQAVISDNSAVNEEESKRIFEEGVQRAQYVQQLVLSTILPDEF
A9NZE0__________________MDAEFWTSRMTAAKRQxxxxxxxxxCLDDLEGDDMRVDFHCPFCYVDFDIASLCCLEEEHS-FETTVAACPVCAVNVGNDIVGHITSQHSHLFKGQRRRKYLRGRIQSNSVQGRERLHSSVGGGSSRLGGCSSNDAPDPLLSSFIYGLPIIESHEQEKTCSSMDDTSTKNSSDSQAVISANSSVTEEESKRMFEEGVQRAQYVQQLVLSTILPDEF

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
248	33		66		0.997452
249	33	66			0.997452
250			66	33	0.997452
251		66	33		0.997452
252		66		33	0.997452
276	25		75		0.996473
277	25			75	0.996473
280			75	25	0.996473
335	20		80		0.995493
336		80		20	0.995493
339	80			20	0.995493
617	11		88		0.923564
619	11		88		0.923564
621	88			11	0.923564
627	14		85		0.993533
628	85	14			0.993533
630			85	14	0.993533
631	85			14	0.993533
645		14	85		0.993533
646	14	85			0.993533
648		85		14	0.993533
863	83	16			0.994512
865			83	16	0.994512
866			83	16	0.994512
870		20		80	0.995493
872			80	20	0.995493
873	20		60	20	0.99255
990		20		80	0.995493
993		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain