SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10118

Length: 279 nt

UniGene Fasta

>biog3_v1.0_unigene10118
AATCGACAGCTGGGACAACGTTCCCTTACATCTCCTCAACATACTCATGCCTTCGTCGCACAAACTGGCGGGGTCGTTCGAACAATGGCTGGAACAACAGATCGATGATACGAATAAAGTAAGTAAGAATATGGAAGCTCCACATTCCTCTCCTCCTCCTGTTTGCATCATCTGTGACATGTTTATGGGATGGGTACACAGCTCGGGTACCAAGTTCAGGATTCCCACCCTCGTCTTCCACACGTCCGGGGCGTTCGGTATGTCTGTCATACACTCCTT

Ace file of the UniGene biog3_v1.0_unigene10118

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1487	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetrahydroxychalcone glucosyltransferase [Dianthus caryophyllus]	-	-	5.0e-40	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	protein	-	-	0.0	57%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	57%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	57%
Blast2go	N-Glycan biosynthesis	00510	57%
Blast2go	Mucin type O-Glycan biosynthesis	00512	57%
Blast2go	Various types of N-glycan biosynthesis	00513	57%
Blast2go	Other types of O-glycan biosynthesis	00514	57%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	57%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	57%
Blast2go	Lipopolysaccharide biosynthesis	00540	57%
Blast2go	Peptidoglycan biosynthesis	00550	57%
Blast2go	Glycerolipid metabolism	00561	57%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	57%
Blast2go	Sphingolipid metabolism	00600	57%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	57%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	57%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	57%
Blast2go	Carotenoid biosynthesis	00906	57%
Blast2go	Zeatin biosynthesis	00908	57%
Blast2go	Flavonoid biosynthesis	00941	57%
Blast2go	Anthocyanin biosynthesis	00942	57%
Blast2go	Flavone and flavonol biosynthesis	00944	57%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	57%
Blast2go	Betalain biosynthesis	00965	57%
Blast2go	Biosynthesis of type II polyketide products	01057	57%
Blast2go	Metabolic pathways	01100	57%
Blast2go	Biosynthesis of secondary metabolites	01110	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA8

Fln msg: Distance to subject end: 353 aas, your sequence is shorter than subject: 92 - 514

Fln protein: IDSWDNVPLHLLNILMPSSHKLAGSFEQWLEQQIDDTNKVSKNMEAPHSSPPPVCIICDMFMGWVHSSGTKFRIPTLVFHTSGAFGMSVIHS

Protein Length: 93

Fln nts: AATCGACAGCTGGGACAACGTTCCCTTACATCTCCTCAACATACTCATGCCTTCGTCGCACAAACTGGCGGGGTCGTTCGAACAATGGCTGGAACAACAGATCGATGATACGAATAAAGTAAGTAAGAATATGGAAGCTCCACATTCCTCTCCTCCTCCTGTTTGCATCATCTGTGACATGTTTATGGGATGGGTACACAGCTCGGGTACCAAGTTCAGGATTCCCACCCTCGTCTTCCACACGTCCGGGGCGTTCGGTATGTCTGTCATACACTCCTT

Fln Alignment:

Contig10118___IDSWDNVPLHLLNILMPSSHKLAGSFEQWLEQQIDDTNKVSKNMEAPHSSPPPVCIICDMFMGWVHSSGTKFRIPTLVFHTSGAFGMSVIHS
C0PRA8__________________MDSKDEIPFHVAEILFSSSHKLAGPFEQWLDGQMN-------NIKAPNSFPPPVCIISEIYTGWVHSSGAKFGIPTVVFHTYGAFAMSVMHS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
127			50	50	1.0
128	50			50	1.0
140		75	25		0.996473
142	50	50			1.0
201			75	25	0.996473
202		75		25	0.996473
209	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain