SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10113

Length: 700 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10113 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16288	12/14
SustainPine v2.0	sp_v2.0_unigene61215	1/14

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA	-	-	1.0e-25	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	histone h1-like protein	-	-	3.10277e-31	76%

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
268			85	14	0.993533
269		85		14	0.993533
432	33			66	0.997452
433		33	66		0.997452
434	33	66			0.997452
559	25	75			0.996473
560	25		75		0.996473
563			75	25	0.996473
702		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
25	42	GGCTTG GGCTTG GGCTTG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain