SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10097

Length: 560 nt

UniGene Fasta

>biog3_v1.0_unigene10097
CCGCCACGCACTCGTCCCAAGCTCACTCCCGATCTCCTCCTCTCCAATGACGGCCTCGGCTACGTTCTGGAGCACATCCCCCGCATGCTTCACTTCAGGGGCCCTGGTCATGAGGTGAGTGATCTGGGTAACCTGATTGAGGCTTTCATTCAATGGCATTCCCGCTTGCTACCTTCTGTCTCTTTCCAGTATTTTGTTGACAGAGTCGAGAAGGTCGGCGCCAGTAAACGTGTTAGGAACTGCCTTCGAGAGCTAAGAGAAAGGGTCGCCAGAGGAGAGAATCCAAAAACTCTGCACGAGCCTCCCGTGGAGCCGACTTCACCTGTAGATGATGTTATGGTAGATGGAGGTGTTGGATCAGAGGACCCAAATAAAGATGTTGCAGATGATGACATTCAAGAGGATTTGTTTGATGAACTCTATCGGTACGCAGTAGGAGAGAATCCAATTTCTTCTTCCCAAAAGGGTTCAGCAAATGAAGTTGGTAGCCTTTCTTTCTCTCAATCACCGATTCTAAATACTACTCCCGAAGGAGCAAGGCTGGCAACAGTCACAACATT

Ace file of the UniGene biog3_v1.0_unigene10097

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17921	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Swi3 multi-domain protein	-	-	2.0e-18	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	timeless-interacting protein	-	-	0.0	53%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	tRNA(Ile)-lysidine/2-thiocytidine synthase	IPR011063	-	-
Sma3	Replication fork protection component Swi3	IPR012923	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACR2

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 186 - 297

Fln protein: PPRTRPKLTPDLLLSNDGLGYVLEHIPRMLHFRGPGHEVSDLGNLIEAFIQWHSRLLPSVSFQYFVDRVEKVGASKRVRNCLRELRERVARGENPKTLHEPPVEPTSPVDDVMVDGGVGSEDPNKDVADDDIQEDLFDELYRYAVGENPISSSQKGSANEVGSLSFSQSPILNTTPEGARLATVTT

Protein Length: 187

Fln nts: CCGCCACGCACTCGTCCCAAGCTCACTCCCGATCTCCTCCTCTCCAATGACGGCCTCGGCTACGTTCTGGAGCACATCCCCCGCATGCTTCACTTCAGGGGCCCTGGTCATGAGGTGAGTGATCTGGGTAACCTGATTGAGGCTTTCATTCAATGGCATTCCCGCTTGCTACCTTCTGTCTCTTTCCAGTATTTTGTTGACAGAGTCGAGAAGGTCGGCGCCAGTAAACGTGTTAGGAACTGCCTTCGAGAGCTAAGAGAAAGGGTCGCCAGAGGAGAGAATCCAAAAACTCTGCACGAGCCTCCCGTGGAGCCGACTTCACCTGTAGATGATGTTATGGTAGATGGAGGTGTTGGATCAGAGGACCCAAATAAAGATGTTGCAGATGATGACATTCAAGAGGATTTGTTTGATGAACTCTATCGGTACGCAGTAGGAGAGAATCCAATTTCTTCTTCCCAAAAGGGTTCAGCAAATGAAGTTGGTAGCCTTTCTTTCTCTCAATCACCGATTCTAAATACTACTCCCGAAGGAGCAAGGCTGGCAACAGTCACAACATT

Fln Alignment:

Contig10097___PPRTRPKLTPDLLLSNDGLGYVLEHIPRMLHFRGPGHEVSDLGNLIEAFIQWHSRLLPSVSFQYFVDRVEKVGASKRVRNCLRELRERVARGENPKTLHEPPVEPTSPXXXXXXXXXXXSEDPNKDVADDDIQEDLFDELYRYAVGENPISSSQKGSANEVGSLSFSQSPILNTTPE
D5ACR2__________________PPRTRPKLTPDLLLSNNGLGYVLEQIPRMLHFRGPGHEVSDLGNLIEAFIQWHSRLLPSVSFQNFVDRVEKVGSTKRVRTCLRELRERVARGENPKTLHEPPVERTSPVDDVTGDGEVGLEDLNKDVADDDIQEDLFDELYRQAVGEDPNSSSQKGSENVVDSHSFSQAPILNNTPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain