SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10094

Length: 319 nt

UniGene Fasta

>biog3_v1.0_unigene10094
TCAAAGGATTTTGAAATGCACCGGTGAAGCTCAAGAAGAGGGTACGCTCTACATGTTAGAATGCCTGGGGCTGCTAGAAGGGGAGCTGTCAGCAGGTGGAGGTAAGCCTTATTTTGCAGGGGACCAGTTTGGGTTCCTGGACATCGTATTGATTCCCAATGCCCCTTGGTTCTATGCACTGGAAACCCTCGCCAAATGGAAAATACCATGGGATGGTGAGTTCCCTAGGCTTCAAGGGTGGATGAAGAGATGCTTGGAGATTGAGAGCATCAAGAAGATTCTTCAGGATCCTCTTAAGGTCTCGGAATATGCCATTCAA

Ace file of the UniGene biog3_v1.0_unigene10094

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10917	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione-S-transferase n=4 Tax=Picea RepID=Q2Q9T2_PICMA	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	tau class glutathione s-transferase	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQB6

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 106 - 232

Fln protein: QRILKCTGEAQEEGTLYMLECLGLLEGELSAGGGKPYFAGDQFGFLDIVLIPNAPWFYALETLAKWKIPWDGEFPRLQGWMKRCLEIESIKKILQDPLKVSEYAIQ

Protein Length: 107

Fln nts: TCAAAGGATTTTGAAATGCACCGGTGAAGCTCAAGAAGAGGGTACGCTCTACATGTTAGAATGCCTGGGGCTGCTAGAAGGGGAGCTGTCAGCAGGTGGAGGTAAGCCTTATTTTGCAGGGGACCAGTTTGGGTTCCTGGACATCGTATTGATTCCCAATGCCCCTTGGTTCTATGCACTGGAAACCCTCGCCAAATGGAAAATACCATGGGATGGTGAGTTCCCTAGGCTTCAAGGGTGGATGAAGAGATGCTTGGAGATTGAGAGCATCAAGAAGATTCTTCAGGATCCTCTTAAGGTCTCGGAATATGCCATTCAA

Fln Alignment:

Contig10094___ILKCTGEAQEEXXXXXXXXXXXXXXXXXXXXXKPYFAGDQFGFLDIVLIPNAPWFYALETLAKWKIPWDGEFPRLQGWMKRCLEIESIKKILQDPLKVSEYAIQ
A9NQB6__________________ILKCTGEAQEEGKRYMLQYLGLLEGELSAGGSKPYFGGEQFGFVDIVFIPYACWFHALETLGKWKIPWESEFPRLQQWMKTCMERESVNKILPDPQKVLEYAVQ

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
218	25			75	0.996473
219		25	75		0.996473
239	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain