SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10092

Length: 1191 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10092

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26965	63/65
SustainPine v2.0	sp_v2.0_unigene60579	2/65

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Snf7 multi-domain protein	-	-	2.0e-20	20%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%
Blast2go	snf7 family protein	-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	92%
Blast2go	endosome transport via multivesicular body sorting pathway	GO:0032509	Biological Process	92%
Blast2go	growth	GO:0040007	Biological Process	92%
Blast2go	embryonic axis specification	GO:0000578	Biological Process	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Snf7	IPR005024	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMS6

Fln msg:

Fln protein: MNQIMDLKITSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKHNEQLNYMRLASRLDAVVSRLDTQAKMMTINKSMTSIVKALDSALATGNLQKMSETMDQFEAQFVNMEVQSQFVENAMAGSTSLSTPEDQVNTLMQQVADDYGLEVSVGLPQAAGHAIPTKPEKVEEDDLSRRLAELKSRG*

Protein Length: 197

Fln nts: GGAACAAGAGCCCAACAAATTTATATAACGTCATTGTGAAGCTTAGTGTTTGACAAAAGGAAAGGCTGAGGAAGATACCACCATCCCAGGGTTTCACGCTTGGATCATCCAGGGCCAAATCAACCAAGAGTCTCAAACAGCATCGTTGTGTTTTTCCGCGGAACCCTGAGCTGAAATCAAATTGTCCAGGAATCTTTACCATTTTGAGTATTTTTATCAAATTCAATGGGGGAAGTGCTGAGAAATTG_-_ATGAATCAGATCATGGATCTGAAAATCACTTCCAAGTCCCTGCAGAGGCAGGCAAGAAAGTGTGAAAAGGAAGAGAAGGCTGAGAAGCTTAAGGTTAAGAAGGCCATAGAGAAAGGAAACATGGATGGAGCTCGGATATATGCAGAGAACTCCATCAGAAAACACAACGAACAATTGAACTACATGCGGTTGGCTTCCCGCTTGGATGCTGTGGTGTCCAGGCTTGATACCCAAGCAAAAATGATGACAATCAACAAATCCATGACATCTATTGTTAAGGCATTGGATAGTGCCCTTGCAACTGGTAATCTTCAAAAGATGTCTGAAACAATGGATCAATTTGAAGCACAATTTGTGAATATGGAGGTTCAGTCTCAATTTGTTGAGAATGCTATGGCCGGTAGCACATCTCTGTCAACACCAGAGGATCAAGTCAACACTTTGATGCAGCAAGTGGCTGATGATTATGGGCTTGAGGTATCTGTTGGCCTACCTCAGGCCGCTGGGCATGCAATTCCTACAAAGCCGGAGAAAGTTGAAGAGGATGATCTGAGTAGGCGTCTTGCAGAGCTCAAATCCAGGGGCTGA___CCATTCCATTTTTCTAGCATTACTGTAAGAACTTTAACTTTTGGTAATTATGTCTTAAATGCCAAATGATGTTGAAAATACCCCCTCTTTGTGTTATGGTAACATAGAGCAGACATATATTTGTCTGTTAAGAACTGCTATTGTGGATAAATGCTTTTGTTTTTCTGTAAGTAGTGGTAATGAATTTGGATTGCGGTGGAATTATCCGTCTCTGGCTTTGGAATTAAAAACATAAAAAAGCTGTTTAGTAGTTTCAGATACTAATTAGTCTTTCTTTGCTCTCTGGGTCTTGCACCAAATTTACTATGTATCATTTTGTACATTAATCTCAATGCATCTTGTCTCTGATTTGGTA

Fln Alignment:

Contig10092___GGSAEKLMNQIMDLKITSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKHNEQLNYMRLASRLDAVVSRLDTQAKMMTINKSMTSIVKALDSALATGNLQKMSETMDQFEAQFVNMEVQSQFVENAMAGSTSLSTPEDQVNTLMQQVADDYGLEVSVGLPQAAGHAIPTKPEKVEEDDLSRRLAELKSRG
A9NMS6__________________GGSAEKLMNQIMDLKITSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKHNEQLNYMRLASRLDAVVSRLDTQAKMMTINKSMTSIVKALDSALATGNLQKMSETMDQFETQFVNMEVQSQFVENAMAGSTSLSTPEDQVNTLMQQVADDYGLEVSVGLPQAAGHAIPTKPEKVEEDDLSRRLAELKSRG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
974	12		87		0.992554
982	14		85		0.993533
983		14	85		0.993533
986	85			14	0.993533
992	16			83	0.994512
1005	40		60		1.0
1010			80	20	0.995493
1038	25		75		0.996473
1039	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain