SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10090

Length: 1386 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10090 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14564	21/22

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TauD domain containing protein	-	-	4.0e-28	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	clavaminate synthase-like protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	0.0	-
Sma3	Taurine catabolism dioxygenase TauD/TfdA	IPR003819	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSL6

Fln msg: W1: There is no M at the beginning,

Fln protein: IEIFATGHGRPDYRGFQGNPHTTTALGGRDSIPKGACRWPCFLSDLHTTTSSSSWGAVRRNKEWVESLLHSSGAVLFRGFPIHTAQDFNEVVVAFGYEELPYVGGAAPRTNVVGRVFTTNDSPPDQPIPFHHEMAQVPEYPAKLFFYCEVEPAVGGETPIVPSHLIYKRMAEKFPDFVKKLEETGLLYIRILGEDDDPSSPIGRGWHSTFLTKDKDEAEKRAARLGMKLEWLEDGGVKTIMGPISAIKVDLSRGRKIWFNSMVAAFTGWKDSRNDPEKAVTFGDGTPLPTDAILACLRILDEEAVAIPWRKGDVLLLDNLAVLHSRRSFEPPRRVLASLCK*

Protein Length: 343

Fln nts: ATTTACTACAATCACAACCCTGCAGGCTACCATTCCTAGTTACCACAATCACAACCCTGCAGGCTACTTCGATGATCTAGATTGAAATATTTGCCACAGGCCATGGGAGACCAGATTACAGAGGATTTCAAGGAAACCCACATACCACAACAGCATTGGGTGGAAGGGATTCCATTCCCAAGGGTGCTTGTCGCTGGCCCTGCTTTCTCTCAGACCTCCACACAACCACCAGCTCAAGCAGTTGGGGAGCCGTAAGACGCAACAAAGAATGGGTGGAGTCCCTTCTGCACTCTAGCGGGGCGGTCTTATTCAGGGGCTTCCCAATACACACAGCACAGGATTTCAATGAGGTTGTAGTCGCATTTGGGTACGAGGAATTGCCTTATGTGGGAGGTGCTGCTCCCAGAACAAACGTGGTGGGCAGAGTTTTTACTACAAATGACTCTCCTCCGGATCAACCAATTCCCTTCCATCATGAAATGGCTCAGGTACCTGAATATCCTGCAAAATTATTTTTTTATTGTGAAGTGGAGCCAGCAGTAGGTGGAGAAACACCGATTGTCCCGAGTCATCTTATATATAAAAGGATGGCAGAGAAATTCCCTGATTTTGTAAAAAAATTGGAGGAAACGGGTTTGCTTTACATTCGTATTTTGGGAGAAGATGATGATCCCTCCTCTCCTATTGGTCGTGGTTGGCACTCTACTTTCTTGACAAAGGATAAGGATGAAGCTGAAAAAAGGGCAGCAAGACTTGGTATGAAGTTAGAGTGGCTTGAAGATGGTGGTGTTAAAACAATTATGGGTCCAATTTCAGCAATAAAAGTTGATTTATCAAGGGGCCGCAAGATCTGGTTCAATAGCATGGTGGCTGCTTTTACCGGCTGGAAAGATTCTCGGAATGATCCTGAGAAGGCGGTCACATTTGGAGATGGGACACCCTTGCCAACAGATGCCATCCTTGCTTGTCTCAGAATTTTAGACGAGGAAGCTGTTGCCATCCCTTGGCGCAAAGGTGATGTTTTATTGCTGGATAACTTGGCTGTTCTGCATTCTCGACGCTCGTTTGAACCCCCTCGTCGGGTATTGGCTTCTCTTTGTAAATAG___TAGCTAAAACAACTTTAGATATAATTCTTCTCTATGTGCATCTGAACAGTATTAATAGCAGAGCCGGCAAATAATTCAGATGCAAATTTACTGAGTAAGTCTGTCTCGCATTTCGACTCTCGTTTGAACCCTTTGTCGGGTAATGGCTTCTCTCTGTAAGTAACTGGCTAAAACAGTTTGTGGATGTTATATTATTCTCTATATGCGTATGACATAATTAATAGTAGAGCCGGCAAATAGTTCACATGCAGATGCAACGAGCATGCCAATTTGCAACATT

Fln Alignment:

Contig10090___VRRNKEWVESLLHSSGAVLFRGFP-IHTAQDFNEVVVAFGYEELPYVGGAAPRTNVVGRVFTTNDSPPDQPIPFHHEMAQVPEYPAKLFFYCEVEPAVGGETPIVPSHLIYKRMAEKFPDFVKKLEETGLLYIRILGEDDDPSSPIGRGWHSTFLTKDKDEAEKRAARLGMKLEWLEDGGVKTIMGPISAIKV-DLSRGRKIWFNSMVAAFTGWKDSRNDPEKAVTFGDGTPLPTDAILACLRILDEEAVAIPWRKGDVLLLDNLAVLHSRRSFEPPRRVLASLCK
C0PSL6__________________IRKEKDWIQHELHESGALLFRGFKSMRTASDFNAFVDAFGWEEHTYQG-AAPRNNVVGRVWTANEAPLDQDIFFHHEMALVKDFPSKLFFFCEIAPPEGGQTAIVRSDRVACEMESKFPSLVQKLEREGILTCTPLPKEENRDYFLGKSWQSHLQTNDPEEAQRRVEAGGSKLVWMEDGSANIIAGPLPATRTFEGYSDRKVWFNYIPAAV--YKKAEN--YNILLCGDGSAIPKDIIEESARVMNNECVEVKWEAGDVLLIDNLAVMHARRPSKPPRRVLVSMCK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
255	66			33	1.0
601		75		25	0.996473
602	75		25		0.996473
620	20	80			0.995493
622		80	20		0.995493
711		14	85		0.993533
713			85	14	0.993533
714			85	14	0.993533
763	20	80			0.995493
767		80		20	0.995493
974	33	66			0.997452
991	66	33			0.997452
1044	25	75			0.996473
1055	25	75			0.996473
1256	33		66		0.997452
1257	33		66		0.997452
1259			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain