SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10071

Length: 519 nt

UniGene Fasta

>biog3_v1.0_unigene10071
AATACTTATGCTGTACATCTTGTGACAAAGATGTTAGATCATGCAAACAAGGAATAATTGCAAGAAATTATATCTTCTCTTCATGGGCATGTTGTTGCTTTTCTCCGGCATCCAGTTGGATCAGCTGTTGTAGAACATGTCTTCAAACTTGCAAATGGAACTCAAAAGCAAGAACTTCTCTCAGAAATATATTCTGCAGAATTTCGGATATTCAAGGGTATCATCCCAAAGGGCAAGGGCAGATTAGTGGATTTGTTATCTGGTGAGCATCCATCAAAAAGGTCTGCAGTTTTGGAGCACATGACATTAGCATTACAGCCAATTCTTGAAAAAGGAATTGTTGACCACTCAATTGTGCATAGAGCTTTGTTGGAGTACATGTGTATATCAAACAAGTCATCTGTGTCAGATATAATTCAGCAGCTATCTGGGCCACTTCTTGTACGAATGATCCATACAAGAGATGGTTCAAAGGTTGGCGCATTTTGTATTATACATGGTGGTGCTAAGGAAAACATT

Ace file of the UniGene biog3_v1.0_unigene10071

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14481	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	72%
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pumilio RNA-binding repeat	IPR001313	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRZ3

Fln msg: Distance to subject end: 305 aas, your sequence is shorter than subject: 173 - 641

Fln protein: NTYAVHLVTKMLDHANKE*LQEIISSLHGHVVAFLRHPVGSAVVEHVFKLANGTQKQELLSEIYSAEFRIFKGIIPKGKGRLVDLLSGEHPSKRSAVLEHMTLALQPILEKGIVDHSIVHRALLEYMCISNKSSVSDIIQQLSGPLLVRMIHTRDGSKVGAFCIIHGGAKENI

Protein Length: 174

Fln nts: AATACTTATGCTGTACATCTTGTGACAAAGATGTTAGATCATGCAAACAAGGAATAATTGCAAGAAATTATATCTTCTCTTCATGGGCATGTTGTTGCTTTTCTCCGGCATCCAGTTGGATCAGCTGTTGTAGAACATGTCTTCAAACTTGCAAATGGAACTCAAAAGCAAGAACTTCTCTCAGAAATATATTCTGCAGAATTTCGGATATTCAAGGGTATCATCCCAAAGGGCAAGGGCAGATTAGTGGATTTGTTATCTGGTGAGCATCCATCAAAAAGGTCTGCAGTTTTGGAGCACATGACATTAGCATTACAGCCAATTCTTGAAAAAGGAATTGTTGACCACTCAATTGTGCATAGAGCTTTGTTGGAGTACATGTGTATATCAAACAAGTCATCTGTGTCAGATATAATTCAGCAGCTATCTGGGCCACTTCTTGTACGAATGATCCATACAAGAGATGGTTCAAAGGTTGGCGCATTTTGTATTATACATGGTGGTGCTAAGGAAAACATT

Fln Alignment:

Contig10071___NTYAVHLVTKMLDHANKE*LQEIISSLHGHVVAFLRHPVGSAVVEHVFKLANGTQKQELLSEIYSAEFRIFKGIIPKGKGRLVDLLSGEHPSKRSAVLEHMTLALQPILEKGIVDHSIVHRALLEYMCISNKSSVSDIIQQLSGPLLVRMIHTRDGSKVGAFCIIHGGAKE
Q9LRZ3__________________NKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYSTELQLFKGLTTSNEKTVVDIIA-KLGLQKGAVNRHMTAIIQPILEKGIVDHTITHKLLIEYLTIADKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
57		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain