SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10044

Length: 1598 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10044 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17386	80/81

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB multi-domain protein	-	-	5.0e-26	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	protein	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	82%
Blast2go	negative regulation of seed germination	GO:0010187	Biological Process	82%
Blast2go	response to salt stress	GO:0009651	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMS2

Fln msg: No stop codon before M and low homology subject,

Fln protein: MLQLPDAQLKEMAAFALGRLAQNSHNQAGIVHEGGLIPLLDLLESKNGSLQHNAAFALYGLADNEDNISDITKEGGVQKLQDVELIVQASKDCVAKTLKRIEEKIHGRVLKHLLYLMRVSDKIVQRRVALALAHLCCVDDQRMIFIDNNGLDVLLGLLEPGSNSKQQHDGAVALHTLAKRATADCPIDAALPPPTPQVYLGEQYVNSHTLSDVTFLVEGRRFYAHRIALLASSDAFRAMFDGGYREKEAKDIEIPNITWAVFELMMRFIYTGTVEVTADIAQDLLRAADQYLLEGLKRLCEYSIAQDLTVENFANIYDLAESYHATSLGHMCVLYFLEHHEQMSNMSGYPSLVERLLPEIRDYLFRILRPQPYMPSQ*

Protein Length: 379

Fln nts: ATTCATCTACCAATATAAAGAAAGAAGTTCTCTTGCTGGAGCTTTACAACCAGTTATTGGTCTGTTGAGTTCACGGTGCCAGGAAAGCCAAAGGGAAGCAGCATTGTTATTAGGGCAGTTTGCAACAACAGATCCTGAATGCAAGGTTCACATTGTCCAACGTGGTGCTGTTCGTCCTCTTTCTAAA_-_ATGCTCCAATTGCCAGATGCCCAACTCAAGGAGATGGCAGCATTTGCTCTTGGTAGATTAGCACAGAATTCACACAACCAAGCTGGCATTGTCCATGAAGGGGGACTAATACCGCTTCTTGATCTTCTAGAGTCTAAAAATGGGTCTCTTCAACACAATGCAGCTTTTGCTCTTTATGGGCTTGCAGATAATGAGGATAATATATCTGACATCACAAAGGAGGGAGGTGTTCAAAAGTTACAAGATGTAGAATTGATTGTCCAGGCATCAAAGGACTGTGTTGCCAAGACTTTAAAGAGGATTGAAGAAAAAATTCATGGAAGAGTATTGAAGCACTTACTTTATCTAATGCGTGTATCAGATAAAATTGTTCAAAGACGCGTTGCTTTGGCTCTTGCTCATCTTTGTTGTGTTGATGACCAGAGAATGATCTTCATTGATAACAATGGTTTGGATGTACTACTTGGACTATTGGAGCCTGGTTCAAATTCAAAACAACAACATGATGGTGCTGTAGCATTACATACACTTGCAAAAAGGGCTACTGCTGATTGTCCAATAGATGCCGCTCTTCCGCCTCCAACACCACAGGTATATTTGGGAGAGCAGTATGTCAACAGTCACACTTTATCAGATGTTACCTTTTTAGTGGAAGGTAGGCGATTTTATGCCCACAGGATTGCACTTCTGGCATCTTCAGATGCATTTCGTGCCATGTTTGATGGTGGTTACCGGGAAAAGGAGGCAAAGGATATTGAAATTCCAAACATAACCTGGGCAGTTTTTGAACTGATGATGAGATTTATATACACAGGTACAGTAGAGGTGACAGCAGATATTGCACAAGATCTTCTGAGGGCTGCTGATCAATACCTTTTGGAAGGCCTCAAACGTTTGTGTGAATATTCTATTGCACAGGACCTTACTGTGGAGAATTTTGCAAATATATATGATCTTGCTGAGTCCTATCATGCAACTTCTTTGGGCCATATGTGTGTTCTGTACTTTCTGGAGCATCATGAACAGATGTCTAACATGTCTGGCTACCCTTCCCTTGTGGAACGCTTACTACCAGAGATACGTGATTACTTGTTTAGAATATTAAGGCCACAGCCTTATATGCCTTCACAGTAAAGGAAGTCATGATCATTTGATTGGCTTCTTGGATGGTCTCATCTTCGCTGAGAACTAGTGCAGATAGAGGTATTTTGAATGTGTTTATCAGCATGCCATGACTACAGCTTGTTATATAAGATGCACTGATTTGTTAAGTGAAATGATTGCGAGACGTCAACTGAATGACACATTCTCAGATCTTTTCAAAATGAACATAAAAGTTTGAAACCAGAGATGAGCCGTCAATTGATATTACACGGTCTTTTGTGTTTCTCTGTCTCATCTAACACTCGAA

Fln Alignment:

Contig10044___PQVYLGEQY---VNSHTLSDVTFLVEGRRFYAHRIALLASSDAFRAMFDGGYREKEAKDIEIPNITWAVFELMMRFIYTGT---VEVTADI----------------AQDLLRAADQYLLEGLKRLCEYSIAQDLTVENFANIYDLAESYHATSLGHMCVLYFLEHHEQMSNMSGYPSLVE
B8LMS2__________________PESNLGQQFGALLEDVENADVTFDVSGEKFHAHRVVLAARSPVFKSMFFGSSEEWNDKEISIEGTKPEVFKAMLHFIYRDTLPDLEEHADLEELSDPSPCFLTPETMIEYLLTAADRYGLRQLRWLCESRISQGITVSTVAKILELAQRYQASQLKSACLKFAASNLEEVMKSEGFEYLKE

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
208		20		80	0.995493
209	60			20	0.99255
210		60		40	1.0
290			87	12	0.992554
293	87			12	0.992554
381	10			90	0.90298
384	90			10	0.90298
397	83		16		0.999991
488			80	20	0.999996
544	10			90	0.90298
631	83	16			0.994512
633	14	71		14	0.984337
878	10			90	0.90298
879	10			90	0.90298
883	90			10	0.90298
1106		22		77	0.999999
1108		22		66	0.999999
1125	15			84	0.999986
1167	10	90			0.90298
1185		90		10	0.90298
1197	12			87	0.992554
1198		12		87	0.992554
1199	12		87		0.992554
1201			87	12	0.992554
1308	14		85		0.993533
1310		85		14	0.993533
1323		88		11	0.923564
1328	11	88			0.923564
1343	10		90		0.90298
1344	90	10			0.90298
1353	11	88			0.923564
1354		11		88	0.923564
1356	88			11	0.923564
1459	14		85		0.993533
1497	75			25	0.996473
1506	33	66			0.997452
1508	33	66			0.997452
1562	25	75			0.996473
1565			75	25	0.996473
1566		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain