SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10040

Length: 481 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10040
ATCCCATCCCTGTGGATTTGACCCACAAGCAATGGAAGGGACAGATCGAGTCAGCTTGCAGTTCGGTCTTTCTCTACGTTGGGAAGGGTACCTGTTGTGATGTTAAAGTGGCTAGGGTTTCTCAGACAAGGGACGAAATTGTGGAGAATTTCGTTGCTGTGATCAATGGTCTTGCATCGGTTATCCCGAGAAAGTGGAAGAACATCCGGTCTTTGCATATGAAATCCTTGGAGTCTGTGGCACTTCCACTCTACCAATCCATTACTGAAACGCCCCTTAAGATTGAAGATGTCAAAACAGAATCACAAATCGATAAACCAGAGAAGAAAGAAGTACATGATCGAGATGTTGAGAGAAAGAAATTCAGGAAGGGAATGATTTCCGATGTTCGGTATATGGATCACATGTTGGGAGATTTTTCTGATGGGCTTTTCGGTGGGAAAAACGGGAATCAAACTGATCTTCTGGACTCCCTAACATT

Ace file of the UniGene biog3_v1.0_unigene10040 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15096	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] emb\|CAB88283.1\| putative protein [Arabidopsis thaliana] gb\|AAL49900.1\| unknown protein [Arabidopsis thaliana] gb\|AEE79812.1\| ribosomal protein L1p/L10e family protein [Arabidopsis thaliana]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	70%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPJ4

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 159 - 423

Fln protein: PIPVDLTHKQWKGQIESACSSVFLYVGKGTCCDVKVARVSQTRDEIVENFVAVINGLASVIPRKWKNIRSLHMKSLESVALPLYQSITETPLKIEDVKTESQIDKPEKKEVHDRDVERKKFRKGMISDVRYMDHMLGDFSDGLFGGKNGNQTDLLDSLT

Protein Length: 160

Fln nts: ATCCCATCCCTGTGGATTTGACCCACAAGCAATGGAAGGGACAGATCGAGTCAGCTTGCAGTTCGGTCTTTCTCTACGTTGGGAAGGGTACCTGTTGTGATGTTAAAGTGGCTAGGGTTTCTCAGACAAGGGACGAAATTGTGGAGAATTTCGTTGCTGTGATCAATGGTCTTGCATCGGTTATCCCGAGAAAGTGGAAGAACATCCGGTCTTTGCATATGAAATCCTTGGAGTCTGTGGCACTTCCACTCTACCAATCCATTACTGAAACGCCCCTTAAGATTGAAGATGTCAAAACAGAATCACAAATCGATAAACCAGAGAAGAAAGAAGTACATGATCGAGATGTTGAGAGAAAGAAATTCAGGAAGGGAATGATTTCCGATGTTCGGTATATGGATCACATGTTGGGAGATTTTTCTGATGGGCTTTTCGGTGGGAAAAACGGGAATCAAACTGATCTTCTGGACTCCCTAACATT

Fln Alignment:

Contig10040___PIPVDLTHKQWKGQIESACSSVFLYVGKGTCCDVKVARVSQTRDEIVENFVAVINGLASVIPRKWKNIRSLHMKSLESVALPLYQSITETPLKIEDVKTESQIDKPEKKEVHDRDVERKKFRKGMISDVRYMDHMLGDFSDGLFGGKNGNQTDLL
B8LPJ4__________________PIPVDLTHKQWRGQIESACSSAFLYVGKGTCCVIKVARVSQTRNEIVENVVAVIDGLASVIPRNWNNIRSLHLKSLESLALPLYQSIPEIPLRIEGVKTEPEADVPEKKEVCDKHVDKKTFKKGRIRDVRYMDNMLGDFSDGILGGEDGNEVDFL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
215	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain