SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10035

Length: 2348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10035
AATGTCCTGCTTTTCTGAAGTAGCAGACGTCCGAGGATCGAAACCCGCGGAGGGCCTTTCTGAACTTTTTTGCCAATGAGCTTTGTCGCCTCGGGAACCCGAGGCCTGTTCTCTATCACCGTCAATTCTACTGCGTTTTGTCCCAGGGAACACCCAGGGGTCCCCGTCAGTAGAGGTCGATTGTTTTGATCTGAGCCAGCAGAGTACCGCTTGGACCATGCAGCTTTGCAGAAATACACAGTTATCTTGACAGGAACGTGGGATTTTCTTGACAGTAGCTTGGAATTTGGTTTCAGAGATCCAATTTTGTGGACATAAACCCTAAATTGTCGACAGAATTACTGGAACTTCATCTCTTGCGAGCAATTTAGGCACACGGATAGAGAAAGAGAAGATCTGGTCGAAAATGGGAACCAATAGTAGGATTTCGGCGCACCAGCTTAGTAATGGACTGTATGTCTCCGGACGGCCGGAGCAGTACAAAGACAAGCAGCCGACGATGAGCTCCACGGCGGTGCCGTACACAGGAGGGGACATCAAGAAGTCTGGCGAGCTCGGTAAAATGTTCGACATTCCGGTTGAAAGTACGAGTAAGATGAAGAAATCCGGGTCTTTTCAGAAAACTCCAGGCCAAGGCCATGGAAGTTCTAATTCGGGACCTTTAACATCTGGCGGAGCTCCCCGCTCGGCTTTTTCGGCTTCGGGCCCTATAAACTCCGGCGGGATTTCACGGCAGAACACGGGCGCAGGTAATAATCAGGGCTCGAAGTCCGGACCTCTTTCCGGTAATCTGGGTCGGCAGATGTCCCAGTCCGGGCCCCTGAATCGAAGCGGAGATATGGCAGTCGGTCCAAATCCAAAAGCTGCACCTTCAAGTGGCAAGAATTCTGGTCCCCAGTCATCTGCTCCTCCTATTGCGAGGACAAACTCTGGTAATTTGCTTCCGGCAACAGGGCTTATAACATCGGGACCTATATCATCGGGTCCTTTATCGTCCTCCGGAGCATTGAAGAAGGTTACCTCTGGTCCCCTGGATTCTTCAGGCGCGCCTGTGAAGATCGTTAGTATGAATCAGAATCAAGCAGTGAGCAATCTTAGCAATGCCGAAGAATATTCCTTCCAGAAGGGATTCCCCAAGATCATATTTTGGATGGTCATCCTCGTGTTTATAATGGGGTTTATAGCGGGAGGGTTTCTCGTGGCTACTGTTCACAACGCAATCTTTTTGATTATCATCGGATCGTTGTTTAGTGTCATTTGCTTTCTGTTCACGTGGAACATTTGCTGGGGGAAGAGGGCTCTGCTTAATTTCTTAGCCTCGAACAGGGATGCAGACTTGAGGAATGCTCGGGACGGACAATATGTGAAAGTTACTGGGGTTGTCACCTGTGGCAGTGTACCTTTAGAGACATCCTATCAGAGAGTTAATCGCTGCATTTACTCATCCACAGGCCTTTATGAGTATAGAGGATGGAAGGCCAAACCTGCCAGGGTGGGGCACCGCCTCTTTACATGGGGTTTGAGGTATTTAGAGAGGCATGTAGCTGAGTTTTACATTTCAGATTTTCAATCTGGCTTAAGAGCTTTGGTAAAAGCTGGTTATGGTGCTCATGTAACTCCTTGTGTTGAAGAAAGTACGATAGTAGATGTTGGTCCAAAGAATAAGGATCTACCTAGTGGTTTTGTCCGTTGGCTGGCTGAAAGAAACCTATCAGGTGATGATCGTGTAATGCGATTAAAGGAGGGGCACATCAAGGAAGGCAGTACAGTGACTGTCATGGGTGTTGTTCAGCGGCATGAGAGTGTTTTGATGATTGTTCCTCCTCGTGAACGGGTATCCACTGGTTGTCAATTGAGCAAATTCCTCTTGCCAGGAAATGTTGAAGGATTGATTATTGCATGTAATGAGACCACAAAGTTTGATGGAATACCGCTTTGATAATGGAGTGCTAGGAAACGTTGCAGTGTTCATTAATACATTGTCTTTTTGCCTTTGTAATTTTAAAATAGGCATCCATTATTTGTACTGAAGAATATTATGAGGATTCCTTTTCCATTGATGAAGGTAGATTTAGGTTTGTTATTACATACTTTCGAGGATGGGATGCTGCCCCCTGATAATCGGGGCAGAAAACTGGACCTTGGAAGAACCTAAAGTATGTGTTCATTAGGACCTCTTGGGGGATTTGCAGGCTGTTTCTTCGGATGTCAGTTGACAGACATGCTCAGTGCTTTGTTGAGCATAAACGTGTGATAGTCACCAGACTCCAACACCATGGACAGAGTTTTGGTTCATTCGATTGACTTGCTATATTGGGATAATGTAATGTTTCAGTGGCTTGATTGTC

Ace file of the UniGene biog3_v1.0_unigene10035 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16852	1/80
SustainPine v2.0	sp_v2.0_unigene21848	4/80
SustainPine v2.0	sp_v2.0_unigene29202	75/80

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	uncharacterized membrane protein at1g16860-like	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR84

Fln msg:

Fln protein: MGTNSRISAHQLSNGLYVSGRPEQYKDKQPTMSSTAVPYTGGDIKKSGELGKMFDIPVESTSKMKKSGSFQKTPGQGHGSSNSGPLTSGGAPRSAFSASGPINSGGISRQNTGAGNNQGSKSGPLSGNLGRQMSQSGPLNRSGDMAVGPNPKAAPSSGKNSGPQSSAPPIARTNSGNLLPATGLITSGPISSGPLSSSGALKKVTSGPLDSSGAPVKIVSMNQNQAVSNLSNAEEYSFQKGFPKIIFWMVILVFIMGFIAGGFLVATVHNAIFLIIIGSLFSVICFLFTWNICWGKRALLNFLASNRDADLRNARDGQYVKVTGVVTCGSVPLETSYQRVNRCIYSSTGLYEYRGWKAKPARVGHRLFTWGLRYLERHVAEFYISDFQSGLRALVKAGYGAHVTPCVEESTIVDVGPKNKDLPSGFVRWLAERNLSGDDRVMRLKEGHIKEGSTVTVMGVVQRHESVLMIVPPRERVSTGCQLSKFLLPGNVEGLIIACNETTKFDGIPL*

Protein Length: 512

Fln nts: AATGTCCTGCTTTTCTGAAGTAGCAGACGTCCGAGGATCGAAACCCGCGGAGGGCCTTTCTGAACTTTTTTGCCAATGAGCTTTGTCGCCTCGGGAACCCGAGGCCTGTTCTCTATCACCGTCAATTCTACTGCGTTTTGTCCCAGGGAACACCCAGGGGTCCCCGTCAGTAGAGGTCGATTGTTTTGATCTGAGCCAGCAGAGTACCGCTTGGACCATGCAGCTTTGCAGAAATACACAGTTATCTTGACAGGAACGTGGGATTTTCTTGACAGTAGCTTGGAATTTGGTTTCAGAGATCCAATTTTGTGGACATAAACCCTAAATTGTCGACAGAATTACTGGAACTTCATCTCTTGCGAGCAATTTAGGCACACGGATAGAGAAAGAGAAGATCTGGTCGAAA_-_ATGGGAACCAATAGTAGGATTTCGGCGCACCAGCTTAGTAATGGACTGTATGTCTCCGGACGGCCGGAGCAGTACAAAGACAAGCAGCCGACGATGAGCTCCACGGCGGTGCCGTACACAGGAGGGGACATCAAGAAGTCTGGCGAGCTCGGTAAAATGTTCGACATTCCGGTTGAAAGTACGAGTAAGATGAAGAAATCCGGGTCTTTTCAGAAAACTCCAGGCCAAGGCCATGGAAGTTCTAATTCGGGACCTTTAACATCTGGCGGAGCTCCCCGCTCGGCTTTTTCGGCTTCGGGCCCTATAAACTCCGGCGGGATTTCACGGCAGAACACGGGCGCAGGTAATAATCAGGGCTCGAAGTCCGGACCTCTTTCCGGTAATCTGGGTCGGCAGATGTCCCAGTCCGGGCCCCTGAATCGAAGCGGAGATATGGCAGTCGGTCCAAATCCAAAAGCTGCACCTTCAAGTGGCAAGAATTCTGGTCCCCAGTCATCTGCTCCTCCTATTGCGAGGACAAACTCTGGTAATTTGCTTCCGGCAACAGGGCTTATAACATCGGGACCTATATCATCGGGTCCTTTATCGTCCTCCGGAGCATTGAAGAAGGTTACCTCTGGTCCCCTGGATTCTTCAGGCGCGCCTGTGAAGATCGTTAGTATGAATCAGAATCAAGCAGTGAGCAATCTTAGCAATGCCGAAGAATATTCCTTCCAGAAGGGATTCCCCAAGATCATATTTTGGATGGTCATCCTCGTGTTTATAATGGGGTTTATAGCGGGAGGGTTTCTCGTGGCTACTGTTCACAACGCAATCTTTTTGATTATCATCGGATCGTTGTTTAGTGTCATTTGCTTTCTGTTCACGTGGAACATTTGCTGGGGGAAGAGGGCTCTGCTTAATTTCTTAGCCTCGAACAGGGATGCAGACTTGAGGAATGCTCGGGACGGACAATATGTGAAAGTTACTGGGGTTGTCACCTGTGGCAGTGTACCTTTAGAGACATCCTATCAGAGAGTTAATCGCTGCATTTACTCATCCACAGGCCTTTATGAGTATAGAGGATGGAAGGCCAAACCTGCCAGGGTGGGGCACCGCCTCTTTACATGGGGTTTGAGGTATTTAGAGAGGCATGTAGCTGAGTTTTACATTTCAGATTTTCAATCTGGCTTAAGAGCTTTGGTAAAAGCTGGTTATGGTGCTCATGTAACTCCTTGTGTTGAAGAAAGTACGATAGTAGATGTTGGTCCAAAGAATAAGGATCTACCTAGTGGTTTTGTCCGTTGGCTGGCTGAAAGAAACCTATCAGGTGATGATCGTGTAATGCGATTAAAGGAGGGGCACATCAAGGAAGGCAGTACAGTGACTGTCATGGGTGTTGTTCAGCGGCATGAGAGTGTTTTGATGATTGTTCCTCCTCGTGAACGGGTATCCACTGGTTGTCAATTGAGCAAATTCCTCTTGCCAGGAAATGTTGAAGGATTGATTATTGCATGTAATGAGACCACAAAGTTTGATGGAATACCGCTTTGA___TAATGGAGTGCTAGGAAACGTTGCAGTGTTCATTAATACATTGTCTTTTTGCCTTTGTAATTTTAAAATAGGCATCCATTATTTGTACTGAAGAATATTATGAGGATTCCTTTTCCATTGATGAAGGTAGATTTAGGTTTGTTATTACATACTTTCGAGGATGGGATGCTGCCCCCTGATAATCGGGGCAGAAAACTGGACCTTGGAAGAACCTAAAGTATGTGTTCATTAGGACCTCTTGGGGGATTTGCAGGCTGTTTCTTCGGATGTCAGTTGACAGACATGCTCAGTGCTTTGTTGAGCATAAACGTGTGATAGTCACCAGACTCCAACACCATGGACAGAGTTTTGGTTCATTCGATTGACTTGCTATATTGGGATAATGTAATGTTTCAGTGGCTTGATTGTC

Fln Alignment:

Contig10035___MGTNSRISAHQLSNGLYVSGRPEQYKDKQPTMSSTAVPYTGGDIKKSGELGKMFDIPVESTSKMKKSGSFQKTPGQGHGSSNSGPLTSGGAPRSAFSASGPINSGGISRQNTGAGNNQGSKSGPLSGNLGRQMSQSGPLNRSGDMAVGPNPKAAPSSGKNSGPQSSAPPIARTNSGNLLPATGLITXXXXXXXXXXXXGALKKVTSGPLDSSGAPVKIVSMNQNQAVSNLSNAEEYSFQKGFPKIIFWMVILVFIMGFIAGGFLVATVHNAIFLIIIGSLFSVICFLFTWNICWGKRALLNFLASNRDADLRNARDGQYVKVTGVVTCGSVPLETSYQRVNRCIYSSTGLYEYRGWKAKPARVGHRLFTWGLRYLERHVAEFYISDFQSGLRALVKAGYGAHVTPCVEESTIVDVGPKNKDLPSGFVRWLAERNLSGDDRVMRLKEGHIKEGSTVTVMGVVQRHESVLMIVPPRERVSTGCQLSKFLLPGNVEGLIIACNETTKFDGIPL
B8LR84__________________MGTNSRISAHQLSNGLYVSGRPEQYKDKQPTMSSTAVPYTGGDIKKSGELGKMFDIPVESTNKMKKSGSFQKAPAQGHGTSNSGPLTSGGAPRSAFSASGPINPGGISRQSTGAGNSQGSKSGPLSGNLGRQISQSGPLNRSGDMAVGPNPKAAPSSGKNSGPQSSAPTIVRTNSGNLLPATGLITSGPISSGPLSSSGALKKTTSGPLDPSGAPVKIVSINQNQAVSNLSNAEEYSFQKGFPKIILWMVILVFIMGFIAGGFLVATVHNAIFLIIIGSLFSVICFLFTWNICWGKRALLNFLASNKDADLRNARDGQYVKVTGVVTCGSVPLETSYQRVNRCIYSSTGLYEYRGWKAKPARVGHRLFTWGLRYLERHVAEFYISDFQSGLRALVKAGYGAHVTPCVEESTIVDIGPKNKDLPSGFVRWLAERNLSGDDRVMRLKEGHIKEGSTVTVMGVVQRHENVLMIVPPRERVTTGCQLGKFLLPGNVEGLIIACNETSKFDGIPL

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
20		66		33	0.997452
21	66		33		0.997452
46		75	25		0.996473
47	75			25	0.996473
55			25	25	0.995533
148	75			25	0.996473
166		80	20		0.995493
167		80		20	0.995493
260	10			90	0.90298
296			90	10	0.90298
355	90		10		0.90298
356	90			10	0.90298
540		90		10	0.90298
543	88	11			0.923564
545		88		11	0.923564
546	88			11	0.923564
603	16	83			0.994512
605	16	83			0.994512
606		83		16	0.994512
616		71	28		1.0
617			71	28	1.0
701		80		20	0.999996
721	10			90	0.90298
755	11	88			0.923564
756	11			88	0.923564
758			11	88	0.923564
892	14			85	0.993533
893	85	14			0.993533
895	85			14	0.993533
896			85	14	0.993533
970	75			25	0.996473
971		75		25	0.996473
1481	16			83	0.994512
1482		16	83		0.994512
1484	83			16	0.994512
1485			83	16	0.994512
1541			66	33	0.997452
1815	11	88			0.923564
1816	11			88	0.923564
1971	16	83			0.999991
2015			10	90	0.90298
2194		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain