SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10016

Length: 1031 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10016 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18012	14/14

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF641 multi-domain protein	-	-	8.40779e-45	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	uncharacterized protein	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Sec1-like protein	IPR001619	-	-
Sma3	Domain of unknown function DUF641, plant	IPR006943	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
55	33		33		0.997753
386	20	80			0.995493
387			80	20	0.995493
448	20			80	0.995493
450	20	80			0.995493
574	16			83	0.994512
577		83		16	0.994512
578		83		16	0.994512
636		20	80		0.995493
638			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain