SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10002

Length: 1249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10002 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6904	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S2Q1_RICCO	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	0.0	60%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	VHS	IPR002014	-	-
Sma3	GAT	IPR004152	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Target of Myb protein 1	IPR014645	-	-
Sma3	VHS subgroup	IPR018205	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACU8

Fln msg: Distance to subject end: 141 aas,

Fln protein: MVKIVKKRPDLNVREKILVLLDTWQEAFGGPRGKYPQYYSAYNDLLRAGVEFPPRPESSAPIFTPPQTQPITYPSQTYGSPDYENEAVEASLASDLPGLSLTEIQNARDIIDVLMQMLNALDPHSKEGIKQEVIIDLVEQCRSYKQRVMHLVNTTLDEGLLCQGLTLNDDLQRVLGKHDAIVAGAPVTWEKTLAPSPSLVNVNNEEDETEDDLVQLSRRSSRVNTQSQDKASSNVRNQPAAPLPLLPPPPGLKKVNTPSNKLEQTVDFLSGDAYESPTTATPPAASPPSGQYMQTSPGSISQQAPYPFNSQPSAQDVLTTQPTYSSSQVLQQPYHPNGSNSLAISSTQQHEYQKFQSEGQESRLDNAGHALQWSNPAGQSHKPQQSILVHDAQSVNLNT

Protein Length: 400

Fln nts: GTGGCGATAATGTTCATCAACAAGTAGCTGAACGAGATGTACTGCATGAA_-_ATGGTCAAGATCGTAAAGAAAAGGCCAGATTTAAATGTAAGAGAAAAAATATTGGTCCTGTTAGATACGTGGCAGGAAGCCTTTGGGGGTCCAAGGGGAAAATATCCACAATATTACTCTGCATACAACGATTTACTGCGTGCAGGAGTAGAATTTCCACCACGTCCAGAGAGTTCTGCTCCAATATTCACACCTCCGCAGACACAACCGATAACTTATCCGTCTCAGACCTATGGATCTCCAGACTATGAAAATGAAGCAGTTGAGGCATCCCTGGCATCTGATCTTCCTGGTCTTAGCCTGACAGAAATTCAGAATGCTCGTGATATTATTGATGTTTTAATGCAGATGCTAAATGCTTTGGATCCCCACAGTAAGGAGGGAATAAAGCAGGAAGTGATAATAGATCTTGTAGAACAATGTCGTTCTTACAAGCAGCGGGTGATGCATCTTGTGAATACAACTTTGGATGAGGGGCTTCTTTGTCAGGGTCTTACATTGAATGATGACCTGCAGCGTGTACTTGGAAAGCATGATGCAATTGTTGCAGGAGCTCCTGTTACATGGGAAAAGACATTAGCTCCTTCACCTTCTCTTGTTAATGTTAACAATGAGGAAGATGAGACAGAGGATGATTTGGTTCAACTGTCTCGGAGGTCTTCAAGAGTGAATACACAATCACAAGATAAAGCTAGTAGCAATGTGAGGAATCAGCCTGCTGCTCCTCTCCCATTGTTACCTCCACCACCAGGACTGAAAAAGGTCAATACTCCATCTAACAAGCTTGAGCAAACAGTGGATTTTCTCAGTGGTGATGCTTATGAGTCACCAACTACTGCAACTCCACCAGCAGCTAGCCCACCCAGTGGGCAATACATGCAGACCTCACCAGGTTCCATTTCCCAACAGGCTCCATATCCATTTAATTCACAACCAAGTGCTCAAGATGTCTTGACAACACAGCCAACATATTCTTCATCCCAAGTGCTACAACAACCATATCATCCAAATGGAAGTAACTCTTTGGCGATTTCTTCAACACAACAGCATGAATATCAAAAGTTTCAATCCGAAGGCCAGGAATCACGTCTGGACAATGCAGGCCATGCTTTACAATGGTCAAATCCAGCAGGGCAGTCCCATAAGCCACAGCAGTCAATTCTCGTACATGATGCACAGTCAGTCAATTTGAATACATT

Fln Alignment:

Contig10002___MHLVNTTLDEGLLCQGLTLNDDLQRVLGKHDAIVAGAPVTWEKTLAPSPSXXXXXXXXXXXXXXXVQLSRRSSRVNTQSQDKASSNVRNQXXXXXXXXXXXPGLKKVNTPSNKLEQTVDFLSGDAYEXXXXXXXXXXXXXSGQYMQTSPGSISQQA-PYPFNSQPSAQDVLTTQPTYSSSQVLQQPYHPNGSNSLAISSTQQHEYQKFQSEGQESRLDNAGHALQWSNPAGQSHKPQQSILVHDAQSVNLN
D5ACU8__________________MHLVNTTLDEELLCQGLTLNDDLQRVLGKHDAIVAGAPVTWEKTLAPPPSLVNVNNEEDETEDDLVQLSRRSSRVITQSQDKASGNVRNQPAAPLPLLPPPPGLKKVNTPSDKLEQTVDFLSGDAYESPTTATPPAASPPSGQYMQTSPGSISQQATPYPFNSQSSAQDVLITQPTYSSSQVLQQPYHPNGSNSLAISSTQQHEYQKFQPEGQELRVDNAGHALQWSNPAGQSHNPQQSILAHDAQSLNLN

SNPs (tot: 3)

Position	A %	G %	T %	Probability
241	20	80		0.995493
242	20		80	0.995493
504	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain