SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9983

Length: 882 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9983

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25332	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI	-	-	49%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	beta-galactosidase 8	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	75%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Separated hits, possible frame ERROR between 387 and 395, Distance to subject end: 490 aas, your sequence is shorter than subject: 294 - 861

Fln protein: NVYVFWNGHEPEKRQYNFEGRFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPLWLHAIPGIELRTDNEPFKYEMETFTTKIVKMMKQDKLFAWQGGPIILTQIENEYQQVEQYYGEKGKSYVNWxxxxMALSLNTSIPWVMCKQTDAPDPIINTCNDFYCDYFQPNSPKKPKMWTENWAGWFQTFGGRTPHRPTEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPYITTSYDYDAPIDEYGNIRQPKWGHLKELHKAIKQCEPALVYGDMSTISVGKNLEATVYT

Protein Length: 295

Fln nts: AATGTTTATGTCTTTTGGAATGGGCATGAGCCTGAGAAACGCCAGTATAATTTTGAGGGAAGATTCGACTTGGTTAGATTTTTGAAGACAGTACAACAAGCCGGCCTTTATGCTCACCTCAGAATAGGACCTTATGCTTGTGCAGAGTGGAATTATGGAGGTTTCCCTCTTTGGTTGCATGCCATACCAGGAATCGAGCTGAGAACAGACAATGAACCATTTAAGTATGAGATGGAAACTTTTACAACAAAGATAGTGAAGATGATGAAACAGGATAAGCTATTTGCATGGCAAGGTGGACCTATTATCTTGACACAGATAGAAAATGAATACCAACAAGTAGAACAATATTATGGAGAGAAGGGTAAGTCATATGTGAACTGGGCxxxxxxxxxAATGGCCTTATCATTAAATACAAGTATTCCATGGGTGATGTGCAAACAAACTGATGCTCCAGACCCAATTATCAATACCTGCAACGATTTCTACTGTGACTATTTCCAACCTAATTCTCCAAAAAAGCCAAAGATGTGGACTGAGAACTGGGCTGGATGGTTTCAGACATTCGGAGGGAGGACCCCTCATAGGCCTACTGAGGATATTGCGTTCGCAGTAGCGCGATTTTTCCAGAGAGGAGGAACATTTCAGAACTATTACATGTACCATGGAGGCACAAATTTTGGCCGGACAAGCGGAGGTCCATACATTACCACCAGTTACGACTATGATGCGCCCATTGACGAATATGGGAATATAAGACAGCCAAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAAACAATGTGAACCTGCTCTAGTCTATGGAGACATGAGTACCATTTCAGTGGGGAAAAACCTTGAGGCAACAGTATATACATT

Fln Alignment:

Contig9983___YVFWNGHEPEKRQYNFEGRFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPLWLHAIPGIELRTDNEPFKYEMETFTTKIVKMMKQDKLFAWQGGPIILTQIENEYQQVEQYYGEKGKSYVNWAxxxMALSLNTSIPWVMCKQTDAPDPIINTCNDFYCDYFQPNSPKKPKMWTENWAGWFQTFGGRTPHRPTEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPYITTSYDYDAPIDEYGNIRQPKWGHLKELHKAIKQCEPALVYGDMSTISVGKNLEATVYT
A9NUR2_________________YVFWNMHEPKQNEYYFEDRFDLVKFVKIVQQAGLLVHLRIGPYACAEWNYGGFPVWLHLIPGIHFRTDNEPFKNEMQRFTAKIVDMMKQEKLFASQGGPIILAQIENEYGNIDGPYGAAGKSYVKWAxxxMAVGLNTGVPWVMCQQADAPDPIINTCNGFYCDAFTPNSPNKPKMWTENWSGWFLSFGGRLPFRPTEDLAFSVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESNYTSLGSGLEAHVYS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
376	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain